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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Araip.T0HX0 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 148aa MW: 16691 Da PI: 4.2621 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 23.3 | 2e-07 | 90 | 132 | 3 | 47 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47
Y+++A GF vrk + + ng ++r+f C ++g+r+e++ +
Araip.T0HX0 90 YKQFAPLRGFGVRKGNVARI--NGVLVRRDFFCHRQGTRHEKHYD 132
9**************99887..******************99877 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 3.8E-5 | 90 | 132 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 148 aa Download sequence Send to blast |
MDLSFDFSGG YDDSDWVSEE EYFEVSSSSG DDEDDPIDND SDAAEMGDDP HASGISSDSK 60 TCLGDAPCFK STEDFLDKVF TTEEDSYAAY KQFAPLRGFG VRKGNVARIN GVLVRRDFFC 120 HRQGTRHEKH YDRPEKYGMR GWRVAQVV |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Araip.T0HX0 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016178890.1 | 7e-75 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| Refseq | XP_025685617.1 | 7e-75 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A444X8Z7 | 1e-102 | A0A444X8Z7_ARAHY; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF17191 | 2 | 6 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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