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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.T0DQ5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB | ||||||||
Protein Properties | Length: 282aa MW: 32911.7 Da PI: 5.1402 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.6 | 2.5e-12 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + + G +W+ +++ g+ R++k+c++rw +yl Araip.T0DQ5 14 RGPWTIEEDHKLMNFILNNGILCWRMVPKLAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56 | 9.3e-18 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+ E++++++++ +lG++ W++Ia++++ gRt++++k++w++ Araip.T0DQ5 67 RGGFTEMEEDQIIQLHSRLGNR-WSKIASHFP-GRTDNEIKNHWNT 110 788*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-20 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.034 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.3E-6 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-10 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.37E-4 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.125 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-16 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.47E-11 | 70 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MGRQPCCEKV GLKRGPWTIE EDHKLMNFIL NNGILCWRMV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGGF TEMEEDQIIQ LHSRLGNRWS KIASHFPGRT DNEIKNHWNT RIKKRLKLLG 120 LDPVTHKQIE QKEQTDDDED KNNNTNLQTT ISQKPQENAE EEIKSMEEET KREEKKVNCW 180 GDDNPEILND FDMMCSKFDL ESWMVKQEIN NNNNTSTTTT SSHCSSSSVS IDDNNYSSHF 240 SKGESKNDHD DQDNLLQQWI ESMDSILSWD GFNAIDQDLF LQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-27 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00510 | DAP | Transfer from AT5G14340 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.T0DQ5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 2e-41 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016207781.1 | 0.0 | myb-related protein 315 | ||||
Refseq | XP_025658849.1 | 0.0 | myb-related protein 315 | ||||
TrEMBL | A0A444YT10 | 0.0 | A0A444YT10_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA16G06900.1 | 1e-128 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6625 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 5e-81 | myb domain protein 40 |