PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.SUE73

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C3H

Protein Properties

Length: 449aa MW: 51603.2 Da PI: 6.963

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.SUE73	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.8e-07	75	97	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C ff+ G+C+ GdrC+F Hg Araip.SUE73 75 MVPCYFFFN-GYCNKGDRCSFLHG 97 689****.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.4	2	25	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.371	28	54	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.6	30	53	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	6.2E-4	72	98	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.1E-6	72	97	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.047	72	99	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.8E-5	75	97	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.4E-6	77	100	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MKTKQNCTLR NTCFSGAECE YRHNEIARLN PRDCWYWLSG SCLNPTCAFR HPPLDGQTGV 60 SSEPTQSAVP ANKTMVPCYF FFNGYCNKGD RCSFLHGHDD SHFTVKPVKN DKGGTDPPNL 120 ENKVLSGTAP STTETQLNPS EQGSEEQVNG HIEPDERWES SSPGFDVLVH DESANLGYEE 180 DPEYLPDGEH EELNEQYLGY EFENPVEYDN MCRKADILYE QEMYDDYRRL DRDLTRANGR 240 RVYDCSSDII LDSMLTRKRI QMSDIATCDG KLDLRDHLRR RRESSGPPDA SFIRRHESSS 300 LMVRNRERHQ RHYNEQRLRG RLSSQVGLTT IDPIGEVETL SIANKPRLFR NSQQHWPRKH 360 YREKPAKRQF HSSNDSRRPV FKQRRFVHES STFSGPKSLA EIREEKKKAA GSFHCKSTSP 420 DFQDPKPLSE ILKGKRSVDG VGDVNVCSN

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MKTKQNCTLR NTCFSGAECE YRHNEIARLN PRDCWYWLSG SCLNPTCAFR HPPLDGQTGV  60
SSEPTQSAVP ANKTMVPCYF FFNGYCNKGD RCSFLHGHDD SHFTVKPVKN DKGGTDPPNL  120
ENKVLSGTAP STTETQLNPS EQGSEEQVNG HIEPDERWES SSPGFDVLVH DESANLGYEE  180
DPEYLPDGEH EELNEQYLGY EFENPVEYDN MCRKADILYE QEMYDDYRRL DRDLTRANGR  240
RVYDCSSDII LDSMLTRKRI QMSDIATCDG KLDLRDHLRR RRESSGPPDA SFIRRHESSS  300
LMVRNRERHQ RHYNEQRLRG RLSSQVGLTT IDPIGEVETL SIANKPRLFR NSQQHWPRKH  360
YREKPAKRQF HSSNDSRRPV FKQRRFVHES STFSGPKSLA EIREEKKKAA GSFHCKSTSP  420
DFQDPKPLSE ILKGKRSVDG VGDVNVCSN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.SUE73

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016177777.1	0.0	zinc finger CCCH domain-containing protein 32-like
TrEMBL	A0A444WXA4	0.0	A0A444WXA4_ARAHY; Uncharacterized protein
STRING	GLYMA05G08496.1	1e-141	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13092	18	23