PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.SS15E
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 112aa    MW: 12676.7 Da    PI: 9.2452
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.SS15EgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.4e-108491055
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 + RR++iN+++  L++l+P +    +k   Ka +L k ++YI+sLq
  Araip.SS15E  8 KARREKINERMKILQDLVPGC----NKVIGKALVLDKIINYIQSLQ 49
                 67******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.62148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-6854IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-7849IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-81053No hitNo description
Gene3DG3DSA:4.10.280.101.3E-161167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MSFVHHWKAR REKINERMKI LQDLVPGCNK VIGKALVLDK IINYIQSLQR QVEFLSMKLE  60
AVNSRLSMNP TIDGFSSKDV TPIIDGTSVL SHLSWQDNNL NLSIAPSSET LI
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.SS15E
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0908475e-67BT090847.1 Soybean clone JCVI-FLGm-5B17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020979992.17e-47transcription factor BPE-like isoform X1
RefseqXP_029149186.17e-47transcription factor BPE-like isoform X1
SwissprotQ0JXE73e-34BPE_ARATH; Transcription factor BPE
TrEMBLA0A444Z2T42e-44A0A444Z2T4_ARAHY; Uncharacterized protein
STRINGGLYMA06G20000.11e-40(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.16e-37BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]