PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.SD3NU | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TALE | ||||||||
Protein Properties | Length: 365aa MW: 41525.1 Da PI: 6.1633 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.8 | 1.5e-07 | 304 | 336 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + Araip.SD3NU 304 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 336 59*****************************87 PP | |||||||
2 | ELK | 29.1 | 2.3e-10 | 257 | 278 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Araip.SD3NU 257 ELKHELKQGYKEKIVDIREEIL 278 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.5E-18 | 93 | 137 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.4E-17 | 95 | 136 | IPR005540 | KNOX1 |
SMART | SM01256 | 8.1E-15 | 133 | 194 | IPR005541 | KNOX2 |
Pfam | PF03791 | 5.5E-11 | 155 | 193 | IPR005541 | KNOX2 |
SMART | SM01188 | 6.1E-4 | 257 | 278 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 257 | 277 | IPR005539 | ELK domain |
Pfam | PF03789 | 8.2E-7 | 257 | 278 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.612 | 277 | 340 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.03E-15 | 279 | 344 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.2E-10 | 279 | 344 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.62E-10 | 280 | 341 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-25 | 284 | 341 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.7E-18 | 297 | 336 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MAFHEHHMQH EIAFQRFTEE QELTAENRDM QQQRAAGVVA PPTWLNNPSS HHHRQQQNFL 60 HQLQPPPPPP ETATTTEKSM DRNTSFESSD ELREYKADIL GHPLYDQLLS AHVSCLRIAT 120 PVDQLPRIDA QLQQSQRVVD NTLMREVWDL ADSTHYVLLL CAFKEQLQQH VRVHAMEAVM 180 ACWDLEQSLQ SLTGVSPGEG TGATMSDDED EQAESNGGGG GGGNLYEGSF DGVDSLGFGP 240 LVPTESERSL MERVRHELKH ELKQGYKEKI VDIREEILRK RRAGKLPGDT TSLLKAWWQS 300 HSKWPYPTEE DKARLVQETG LQLKQINNWF INQRKRNWHT NPSSSSNSKT KRKSSAGESS 360 NQSFM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.SD3NU |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015932448.1 | 0.0 | homeobox protein knotted-1-like 4 isoform X1 | ||||
Refseq | XP_025607729.1 | 0.0 | homeobox protein knotted-1-like 4 isoform X1 | ||||
Swissprot | P48001 | 1e-150 | KNAT4_ARATH; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | A0A445EMT1 | 0.0 | A0A445EMT1_ARAHY; Uncharacterized protein | ||||
STRING | XP_007155117.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11060.1 | 1e-146 | KNOTTED1-like homeobox gene 4 |
Publications ? help Back to Top | |||
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