PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.S9XVH
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 585aa    MW: 65293.3 Da    PI: 9.0157
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.S9XVHgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.82.3e-1436963599
                 EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3 35 tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  ++++ +sg+sW v+l   k  + +++ +GW +Fv +++L+ gD +vF+++g  +f  +v+vf+k
  Araip.S9XVH 36 LVSVTGPSGKSWPVQL--IKMENDMFFHQGWPSFVGDHRLECGDLLVFRYEGYLNF--TVQVFDK 96
                 68999***********..88888899************************986666..9*99998 PP
2B348.71.4e-15235327196
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                  f+ ++++ +v+ s  l +p +f  +h   ++++++++l +++g+ W+v+    ++   +++l +GW  Fv+ n++k+gD+++F+l+++ e   +v++
  Araip.S9XVH 235 FVRIMKSFNVSGSYTLNIPYQFSMAHL--PNCKIKIILHNLKGEHWTVNSVPsTRVHTSHTLCGGWMAFVRGNNIKVGDVCIFELVHECEL--LVRI 327
                  556667778888899*******98996..46999***************9445555667999**********************9985444..6665 PP
3B353.54.2e-17465557196
                  EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                  f+k++++ +v+ s  l +p +f ++h        +++++l++++g+sW+v+   + k+++ +++ +GW  Fv++n+++ gD+++F+l+   ++e++v 
  Araip.S9XVH 465 FVKIMKKFNVSGSYTLKIPYQFSAAHlpA----YKTEIILRNLRGESWTVNSVPDAKGRTvHTFCGGWMAFVRDNDINFGDTCIFELVA--QGEMRVY 556
                  89999999***************999533....4468***************77666666799***********************986..5666776 PP

                  E CS
           B3  96 v 96 
                  +
  Araip.S9XVH 557 I 557
                  6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.0E-61197IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-1727101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-153399IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-113597IPR003340B3 DNA binding domain
PROSITE profilePS5086312.5623797IPR003340B3 DNA binding domain
CDDcd100172.93E-133795No hitNo description
Gene3DG3DSA:2.40.330.102.2E-20227328IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-22228328IPR015300DNA-binding pseudobarrel domain
CDDcd100175.94E-19233327No hitNo description
PfamPF023623.1E-12235326IPR003340B3 DNA binding domain
PROSITE profilePS5086312.774235331IPR003340B3 DNA binding domain
SMARTSM010194.2E-11235331IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.2E-22457558IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-23458559IPR015300DNA-binding pseudobarrel domain
CDDcd100175.13E-20463557No hitNo description
PfamPF023622.0E-14465557IPR003340B3 DNA binding domain
SMARTSM010192.4E-14465561IPR003340B3 DNA binding domain
PROSITE profilePS5086313.662465561IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MACESCGCEG NLNVRKPQFY EFYSSTPEKL GRADGLVSVT GPSGKSWPVQ LIKMENDMFF  60
HQGWPSFVGD HRLECGDLLV FRYEGYLNFT VQVFDKNKCE KLGFNSECSQ NSGNFDNIRG  120
HKRDRNEKSS LDVIVEGATK KMRGNNADNQ ELKLSIVGKD ILQYELVKPI SMFKEKEETS  180
RACSTNDIPL PFHVGNSNED EDADQYILNG ISLSNLAAHD EKKVARSFTS SFPYFVRIMK  240
SFNVSGSYTL NIPYQFSMAH LPNCKIKIIL HNLKGEHWTV NSVPSTRVHT SHTLCGGWMA  300
FVRGNNIKVG DVCIFELVHE CELLVRIAGG GKDLQDPVAK PDLSNPSAGH AITCHKASRY  360
MSVNPKDNPK SIINVDQSVK KRSKVGQEAA FSIELRKSGK RSNSSKKTGL GNRTKAANKK  420
LETAAQKRHR VEDELSSQAN AGLRMLFALD EQRVAQAFTS PFPNFVKIMK KFNVSGSYTL  480
KIPYQFSAAH LPAYKTEIIL RNLRGESWTV NSVPDAKGRT VHTFCGGWMA FVRDNDINFG  540
DTCIFELVAQ GEMRVYISGV GKEGLEHQNG QVKLNRLLAN VPSTC
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.S9XVH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016163159.10.0B3 domain-containing protein Os01g0723500
TrEMBLA0A444YWM00.0A0A444YWM0_ARAHY; Uncharacterized protein
STRINGGLYMA14G08641.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-15B3 family protein