PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.S5ATW
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 245aa    MW: 27419.9 Da    PI: 8.7588
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.S5ATWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-14547155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++++GVr++  +g+Wv           ++r++lg+f tae Aa+a+++a+  ++g
  Araip.S5ATW  5 KKFRGVRQRQ-WGSWV-----------KRRVWLGTFETAEAAARAYDQAAILMNG 47
                 59*****999.*****...........5**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.36E-16555No hitNo description
PfamPF008471.3E-6647IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-20656IPR001471AP2/ERF domain
SMARTSM003801.2E-28661IPR001471AP2/ERF domain
PROSITE profilePS5103217.293655IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-14656IPR016177DNA-binding domain
PRINTSPR003671.4E-10718IPR001471AP2/ERF domain
PRINTSPR003671.4E-103757IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVQAKKFRGV RQRQWGSWVK RRVWLGTFET AEAAARAYDQ AAILMNGQNA KTNFPSTKNN  60
QQSHHHNNNA TTTTSSSSCN DDSSFLSPKA LSELLSAKLK KCCGKDPSSP SLTCLRLDAD  120
NSHIGVWQKG PGRHSDSSWV MRVELGSKNQ QKQHEGNKVI FPSSPSNNNI NSSSNNNNNN  180
NNVVVIGEND DENRIEEENR VAMQMIEELL NWNNYPFGSS SSNNNNNSQQ QQQEDQKRNL  240
PCHSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-146591476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15319479}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.S5ATW
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025615686.11e-133ethylene-responsive transcription factor SHINE 2
SwissprotQ3E9585e-59SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A445C0W31e-131A0A445C0W3_ARAHY; Uncharacterized protein
STRINGXP_004501327.11e-71(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.13e-36ERF family protein
Publications ? help Back to Top
  1. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  2. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]