PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RYN1Z
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 523aa    MW: 59829.9 Da    PI: 8.767
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RYN1ZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.25.6e-1861147191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++  ++ei+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.RYN1Z  61 KFYRNYAKAAGFSTRVRCTNRK--ENEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 147
                  6***************988776..7779*************998877...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-1561147IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.013310346IPR007527Zinc finger, SWIM-type
PfamPF044349.6E-4312340IPR007527Zinc finger, SWIM-type
SMARTSM005750.0036321348IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MDHSTSDSQL NPGEVDYEFE SNEVPEPVYL QFMALKPLSV VDDELVPKVG MTFTTLEDAG  60
KFYRNYAKAA GFSTRVRCTN RKENEIKNQL ITCSREGKWK SKISPTEKTN PTAGLNCPAR  120
IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRCTIENN EEADLYEDRH  180
IWVPIYLDHH LWAGMRSTQR SESMNSFFNK FIIRNNSLIQ FVKQYDNCLG SREQAERESD  240
AADFHTVIPC ATKSSIEAQF QEAYTHAKFR EVQAQFRGKA NCITRLKNSA LGYSVYEVGE  300
QVFSSIFNKF VVTYDSVAAE VKCQCLLFES RGILCRHALS MLRFEQVSQV SPRYILERWS  360
KKVKRRHTHI KSSHDEPLME PRSKRFNQLV FRSQNICEFA SESEELTAIL HRAYDNVMPE  420
MEALKAKRKG TSSLSHEEAN LESVNELQSQ PRIRTRGRPK NRLGSKLEKQ IANATKKKKT  480
KVLSEINLFD AASAAHSNSS QYQGHVMNYQ FRVPAAGDNS LGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RYN1Z
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.27e-37far-red elongated hypocotyls 3