PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.RW92I | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | B3 | ||||||||
Protein Properties | Length: 239aa MW: 27356 Da PI: 10.0976 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.4 | 4.6e-17 | 140 | 229 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k++++s+v+ +l l+ +f+++h + ++ +tl de+g ++e + rk++ l++GW++F a++L +gD +vF+l++r++f +v ++r Araip.RW92I 140 FVKTMLQSHVTGGFWLGLSVQFCKTHLPN--RDERITLIDEDGDEYETLYLARKTG----LSAGWRGFSIAHNLVDGDALVFELISRTTF--KVYIVR 229 89************************533..5557***************656665....*************************98888..777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.8E-21 | 133 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.88E-24 | 133 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.81E-27 | 138 | 229 | No hit | No description |
Pfam | PF02362 | 3.6E-14 | 140 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.069 | 140 | 231 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-24 | 140 | 231 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MTAKASEYEE IRRKRLEENK KRMEALNLPN LSQALHTSPL SKSKSHSPSP LKRVKSRTIE 60 KQVVVVRRSS RVANMPAPVY KEVVIDRVVT PRSRRYGGSY DRYRDYSKRV YASDEARQEA 120 LDKADKIQSD LQSKSHHPSF VKTMLQSHVT GGFWLGLSVQ FCKTHLPNRD ERITLIDEDG 180 DEYETLYLAR KTGLSAGWRG FSIAHNLVDG DALVFELISR TTFKVYIVRV NSPAEGEEQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.RW92I |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016174093.1 | 1e-178 | B3 domain-containing protein At5g42700 | ||||
Refseq | XP_025679908.1 | 1e-178 | B3 domain-containing protein At5g42700 | ||||
Swissprot | Q9FMZ4 | 8e-73 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A444XDM5 | 1e-177 | A0A444XDM5_ARAHY; Uncharacterized protein | ||||
STRING | XP_004501577.1 | 1e-115 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 6e-68 | B3 family protein |
Publications ? help Back to Top | |||
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