PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.RS6LP

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 523aa MW: 58775.3 Da PI: 6.3785

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.RS6LP	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.1	1.9e-20	420	508	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 fYn++++ GFs+rk k +s+ +++i ++tfvCs++g+r + + t+++r +++etr+gC a+++v+ + ++ w+ t +++eHnH+ Araip.RS6LP 420 FYNAFGRVNGFSIRKFKVGRSEIDKRILWQTFVCSRQGYRIFRGVDeTNRKRAPKPETRCGCVAQMQVHIDVgRDWWYTTLFQNEHNHD 508 9*************************************9887664788999**************99999**********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.6E-19	420	508	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence Send to blast
MLRPGGWTII RDKVEISHNL LKYEKITSST AVRRDSAAAV RVAPRPSTLA VVSPLAVLLS 60 IEEYVSLTIV TKFRRKAKMN EIVDISYLRK VNNVEVPPCA KTFPSLIVVH CLTLSPNSLK 120 HTFANAVKSL LQEYASVQNN IPSEVFDEFR LDLVDDISSN VMLRAILSLA FIDYGILSVE 180 FLLYCQVQTS GALLSLSTND YNTLNGLFSC DMGVLKQYCE FANFNPLKEN PYSDTIKHKG 240 ITGQLKIEGF SDLLFESWQL CSRASHKFFG TIVLIGALIS LSVNDSEILN GSFSSDMGVF 300 KLVFCLLKNS IRLIHKGTIK IEGLSNLLFD ELLRICENVS RLSCHHSTKM VDLIGESSHN 360 QIENVSAEEM DELLVDSDGN DVEDLLLNSI GSIGRVNFVG LSVDAAKKYV FSDLDVAYAF 420 YNAFGRVNGF SIRKFKVGRS EIDKRILWQT FVCSRQGYRI FRGVDETNRK RAPKPETRCG 480 CVAQMQVHID VGRDWWYTTL FQNEHNHDTP NFEPDVEIAT END

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence Send to blast

MLRPGGWTII RDKVEISHNL LKYEKITSST AVRRDSAAAV RVAPRPSTLA VVSPLAVLLS  60
IEEYVSLTIV TKFRRKAKMN EIVDISYLRK VNNVEVPPCA KTFPSLIVVH CLTLSPNSLK  120
HTFANAVKSL LQEYASVQNN IPSEVFDEFR LDLVDDISSN VMLRAILSLA FIDYGILSVE  180
FLLYCQVQTS GALLSLSTND YNTLNGLFSC DMGVLKQYCE FANFNPLKEN PYSDTIKHKG  240
ITGQLKIEGF SDLLFESWQL CSRASHKFFG TIVLIGALIS LSVNDSEILN GSFSSDMGVF  300
KLVFCLLKNS IRLIHKGTIK IEGLSNLLFD ELLRICENVS RLSCHHSTKM VDLIGESSHN  360
QIENVSAEEM DELLVDSDGN DVEDLLLNSI GSIGRVNFVG LSVDAAKKYV FSDLDVAYAF  420
YNAFGRVNGF SIRKFKVGRS EIDKRILWQT FVCSRQGYRI FRGVDETNRK RAPKPETRCG  480
CVAQMQVHID VGRDWWYTTL FQNEHNHDTP NFEPDVEIAT END

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.RS6LP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14598	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-13	FAR1 family protein