PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RMK33
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 330aa    MW: 37429.3 Da    PI: 5.4126
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RMK33genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08203247655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++ r RR++i ++ +eL +l+P +      K++ ae+L  A +Y+k+Lq
  Araip.RMK33 203 SIAARERRRNITEKTQELGKLVPGS-----SKMNTAEMLHAASKYVKYLQ 247
                  67889******************98.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.65E-7193250No hitNo description
SuperFamilySSF474596.8E-12195258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.443197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-11200256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-6203247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MALSTYLNGD ALQSSIISEI FTTKFQELTT PEELTLDHFY HQHSQEGLFS NNFFFDPYFD  60
FNNGFFHPEI LSSHQLGHSC TSSHDPFISP KPNNLFQIEY SNVNTLLSCP KRQKYFHKDE  120
ELQLSSPFKE YASPSLFDGF ILNSSSLLPS EEAALAEELL LPAPVTTPSS DFMVPNVVRN  180
GFCVGINNES QKKDSKRTIS AQSIAARERR RNITEKTQEL GKLVPGSSKM NTAEMLHAAS  240
KYVKYLQTQI GMLQLMNTLQ KEDEVVPPSE DLCALITSPF VQEKLYSEEL CFVPKDFVTT  300
LTNQRDVRSK PTIFKDLKEL IETNNVQKKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RMK33
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016167826.10.0transcription factor bHLH53-like
RefseqXP_025673383.10.0transcription factor bHLH53-like
TrEMBLA0A444Y8N00.0A0A444Y8N0_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.13e-33bHLH family protein