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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.R44YW | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 27563.8 Da PI: 6.8292 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 25.2 | 2.9e-08 | 140 | 187 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+++Er RR +iN+++ L+ ++P + k + a +L + ++Y++sLq Araip.R44YW 140 SHSIAERVRRGKINEKLRCLQNIVPGC----YKTMGMAVMLDEIINYVQSLQ 187 8*************************9....35599999**********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.82E-9 | 134 | 191 | No hit | No description |
SuperFamily | SSF47459 | 1.24E-15 | 134 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.71 | 136 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-15 | 136 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-5 | 140 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.7E-7 | 142 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MIMKPFLDID PSMDLINQFI GLNTTTTTTT THMNMCDNLF GSHHHHHHHQ DDFQGNLEES 60 FHQNHHHVNN NASSVVVPVI SSSLLNYYPS ENEEVHEGKK RKATTSGNST PAASHHSESK 120 IIKNNEVVHV RARRGQATDS HSIAERVRRG KINEKLRCLQ NIVPGCYKTM GMAVMLDEII 180 NYVQSLQHQV EFLSLKLTAA STFYDFNSET DALETMQASE AKELGKYGKE GHGGVSCYQP 240 NWPLV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.R44YW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031256 | 1e-111 | KT031256.1 Glycine max clone HN_CCL_43 bHLH transcription factor (Glyma07g10311.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020958549.1 | 1e-145 | transcription factor BEE 1-like | ||||
Refseq | XP_025650977.1 | 1e-145 | transcription factor BEE 1-like | ||||
TrEMBL | A0A444Z0I5 | 1e-143 | A0A444Z0I5_ARAHY; Uncharacterized protein | ||||
STRING | XP_007154151.1 | 1e-104 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3360 | 34 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18400.1 | 5e-60 | BR enhanced expression 1 |