PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.R2Q4H
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 527aa    MW: 59100.1 Da    PI: 6.1294
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.R2Q4HgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.4e-10449498147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      + rW++ E++ l  +v+++G+g+Wk+I +      + R + ++k++w++ 
      Araip.R2Q4H 449 KRRWSPMEEDALRIGVEKFGSGNWKAILSLYRnifEDRKAIDLKDKWRNM 498
                      579*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.071444503IPR017930Myb domain
SuperFamilySSF466892.17E-15446501IPR009057Homeodomain-like
SMARTSM007172.9E-8448501IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-12448500IPR009057Homeodomain-like
PfamPF002496.4E-8449498IPR001005SANT/Myb domain
CDDcd116602.71E-17450500No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MDPDISRWLA EFQLRSSAPN SVVADFLKSL NLSKPDNKLK KTLLLRILQS EITNASITEE  60
ALEVLEEIEA IDGNDAVPLL DFMRTAYCAI AVECTVKYLS ATSDGVPSKE YLAAMARIWF  120
GRVLKLEHSR SKLFSYELAQ WMENIEAAVV DTEIYQRLAK LNTRYDAFSA VRVYLQKVWE  180
TMGPCFLDTL AEMTFKGMKK ESASRVLLME GVGLNGGHEG KEQLEERAEG SVDGTQEPAK  240
GEKASQKGDP QLQRKLPAFL RCHRGVNKSI AEELGTEHSG SKNGTKFSAE VKVAEESLPE  300
ALNVSDAVGL KLAQKGKNQE GLMENMSGDV DMPNLNTSRA IVLFQPNDAD HEKKSSVHHS  360
RVQVQCSNLM EENSTAHESP NLMEQNSTAH EIPNLMEQNS TAHEIPNLME QNSTAHESPN  420
LMEQNSTPRR YKRDNSKGNP TGVQLRRKKR RWSPMEEDAL RIGVEKFGSG NWKAILSLYR  480
NIFEDRKAID LKDKWRNMMR TCSFAAADPL EPSLVVFTSI LHFVPPI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.R2Q4H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016184812.10.0uncharacterized protein LOC107626446
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-20MYB_related family protein