PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.R1XQM | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TALE | ||||||||
Protein Properties | Length: 133aa MW: 15928.1 Da PI: 9.0856 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.1 | 3.4e-09 | 76 | 109 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yp+++++ L+k++gL+++q+ +WF N+R ++ Araip.R1XQM 76 WPYPTHADKVALTKWTGLDTKQINNWFINQRKRH 109 59****************************9885 PP | |||||||
2 | ELK | 27.9 | 5.4e-10 | 29 | 50 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK+ Llr sgy+ +Lk+EFs Araip.R1XQM 29 ELKDDLLRRHSGYITNLKHEFS 50 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51213 | 9.341 | 29 | 49 | IPR005539 | ELK domain |
SMART | SM01188 | 7.7E-6 | 29 | 50 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.1E-8 | 29 | 50 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.305 | 49 | 112 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.5E-18 | 51 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.9E-10 | 51 | 116 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.77E-11 | 53 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 54 | 114 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.1E-15 | 69 | 108 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
NEVITGSSEK CLHKENYDEK ETNIINHQEL KDDLLRRHSG YITNLKHEFS KNKKKERLPN 60 EAKQILLAWW DIHFKWPYPT HADKVALTKW TGLDTKQINN WFINQRKRHW KQTEKMETTV 120 ILDGIYGPIC ITD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a role in meristem formation and/or maintenance. Overexpression causes the hooded phenotype characterized by the appearance of an extra flower of inverse polarity on the lemma. Binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.R1XQM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019416427.1 | 2e-53 | PREDICTED: homeobox protein knotted-1-like 2 | ||||
Swissprot | Q43484 | 3e-34 | KNOX3_HORVU; Homeobox protein KNOX3 | ||||
TrEMBL | A0A4P1QXB8 | 4e-52 | A0A4P1QXB8_LUPAN; Uncharacterized protein | ||||
STRING | GLYMA04G35850.2 | 3e-45 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF620 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23380.1 | 2e-36 | KNOTTED1-like homeobox gene 6 |
Publications ? help Back to Top | |||
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