PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.R1QQF
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 574aa    MW: 62602.6 Da    PI: 8.9695
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.R1QQFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.4e-10179203226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C ++++ G Ck+G++Ck++H+
  Araip.R1QQF 179 GEKDCAYYMQHGSCKFGENCKYNHP 203
                  7889********************8 PP
2zf-CCCH18.24.5e-06513535426
                  ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  + C+ +   G+Ck+G+ CkF H+
  Araip.R1QQF 513 SACPEYICLGICKFGACCKFDHP 535
                  568888888*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-4177204IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.441177205IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-8179203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6180205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.319509537IPR000571Zinc finger, CCCH-type
SMARTSM003567.9510536IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 574 aa     Download sequence    Send to blast
MGNLQTKWAA STVQPSESNS ASSSSSLFTN GSGQQHPPQP PRAPLSSPSD HHQTSQEGAL  60
CGDLKGKLEL KGEGRVGVET LDQVLNFGQQ GVNGDDRDIE GSERNSWEDD YVNESVYDGN  120
CVGAEKRKKR GAGRKTKVAK EQSQERQEPS ERSGQTECKY YPSLPAAELN FLDLPIRPGE  180
KDCAYYMQHG SCKFGENCKY NHPNPTTGGC DPPPMYDNVG SISFSGVLQQ SASSGSSPGT  240
VNKTSPFLPM MLLPTQVSPQ DSDWNAYHYQ APICPCVMSM HPPTHVKSYP AIETNAYTPQ  300
QNQIQVGVDE FAEIPGDSKP KSKRKSRCKK NKLASLPPCN LNGKGLLLRP APICPSTMSM  360
HPPKYVMNNS TIKTNAYTPR QKQIQDGVDE FAKIPEDSKS KSKGKSRRQK NKLANLPPST  420
LNDKGLLLRP APIKPSVMGM HPPTHVMNNP AIKTKASTPR QKQMQVGVDE LAEIPGDSKS  480
KSKRKSHRQK NKLASVPPCT LNDKGLPLKP DKSACPEYIC LGICKFGACC KFDHPSNPPP  540
SLTIHSVYQQ SYTNSAGVEV AWMGSSDPTI QQTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1482486KRKSH
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.R1QQF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016189812.10.0zinc finger CCCH domain-containing protein 43 isoform X1
RefseqXP_025628954.10.0zinc finger CCCH domain-containing protein 43
TrEMBLA0A445ATC80.0A0A445ATC8_ARAHY; Uncharacterized protein
STRINGXP_007155512.16e-57(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2863822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-31C3H family protein