PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.R0K9W
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 497aa    MW: 56464.5 Da    PI: 7.0075
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.R0K9WgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-07182204427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  + C++f + G+Ck+G++C++ Hg+
  Araip.R0K9W 182 KTCHYFNK-GYCKHGESCRYYHGQ 204
                  57******.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.178178205IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5180203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4182204IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-5182204IPR000571Zinc finger, CCCH-type
PfamPF128727.1E-7229300IPR025605OST-HTH/LOTUS domain
Gene3DG3DSA:3.30.70.3302.4E-6301357IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549281.63E-8301367IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MDISEVMNIP DYTRILFDKL QKFEPEYASK IIGILLLHNE HDIAKLATCP DHIVRDVAFK  60
AKNDLQRMSA HKPSIIPISV PMNPPQGLSH LSVISPRTPT SPPSFPVHNS PYWDPYPATN  120
TNPEFMKYSD SIAELQNQAE LYGLESHVDP IGSDFYGLEA STPNFGGKAG RRYSGLSDFP  180
VKTCHYFNKG YCKHGESCRY YHGQAGSESF SHMYGNDFVN DDPVVSPGSL AQLEREIVDL  240
LKQRRRNPIT IAALPMAYYD KYKKVLQADG YLTESQRHGK SGYSLTKLLA RLSNSICVID  300
STFGCVEDVR IPCQQKRMFG FVTFIDPQTV KTILDKGNPH YVRGSRVLVK PYREKSKVIE  360
RKYARIQHSM CYSPHHIDMD SEMNSISRSC GNARSLRRQL MEEQEQALEL VEMQRRRLAA  420
LQFAQNSLST SPHFRFSTNG MRASEDNFNF NFHPQESFND NEKPSNIDTN FSDENSSSQG  480
LDLPDSPFAF PVENENQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.R0K9W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166729.10.0zinc finger CCCH domain-containing protein 18 isoform X1
RefseqXP_016166730.10.0zinc finger CCCH domain-containing protein 18 isoform X1
RefseqXP_020962570.10.0zinc finger CCCH domain-containing protein 18 isoform X1
RefseqXP_025666354.10.0zinc finger CCCH domain-containing protein 18 isoform X5
TrEMBLA0A444YFD30.0A0A444YFD3_ARAHY; Uncharacterized protein
STRINGGLYMA08G43790.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF288177