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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.QQN2T | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | AP2 | ||||||||
Protein Properties | Length: 365aa MW: 41323 Da PI: 6.2016 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9e-19 | 67 | 116 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 +y+GVr+++ +g+++AeIrdp++ng +r++lg++ +eeAa a+++a+ kl+ Araip.QQN2T 67 RYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYEKEEEAALAYDRAAFKLR 116 8********.***********9998..************************98 PP | |||||||
2 | AP2 | 61.4 | 2.1e-19 | 201 | 251 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp++ng +r++lg++ t+e+Aa a+++a+ k++g Araip.QQN2T 201 RYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYETEEKAAIAYDKAAFKMRG 251 8********.***********9998..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.97E-25 | 66 | 116 | No hit | No description |
Pfam | PF00847 | 2.0E-13 | 67 | 117 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.1E-25 | 67 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.7E-27 | 67 | 132 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.259 | 67 | 126 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-18 | 67 | 118 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.31E-30 | 200 | 261 | No hit | No description |
Pfam | PF00847 | 2.3E-13 | 201 | 251 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-23 | 201 | 260 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-32 | 201 | 260 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-38 | 201 | 265 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.777 | 201 | 259 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-13 | 202 | 213 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-13 | 241 | 261 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 365 aa Download sequence Send to blast |
MDSDYEFLES VQEYLLGHDS NNTVDLFDHN TLQSPSHNPL PNPKSDILQE QERDTNENEH 60 APPTWKRYRG VRRRPWGKFA AEIRDPKKNG ARVWLGTYEK EEEAALAYDR AAFKLRALQK 120 NMASITIMDS SESAYLEYIQ QYLLENDSII FTNDLKMDDS KSCQAGSNPN CDSISDTTSH 180 SESPTGASAG REVHAPPTWK RYRGVRRRPW GKFAAEIRDP KKNGARVWLG TYETEEKAAI 240 AYDKAAFKMR GRKAKLNFPH LIGSDEKSVS SSELSSEPVI VSAVKRISPE PCLPSSPSSE 300 DDSNSPGSKR RRNLADLLNK IAKNRNQTNK VVKMDPEANV ADYWLNDEFN MILFFAVGVD 360 DQEVI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-28 | 66 | 266 | 4 | 70 | ATERF1 |
3gcc_A | 1e-28 | 66 | 266 | 4 | 70 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.QQN2T |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC355785 | 0.0 | KC355785.1 Arachis hypogaea clone Unigene12659 ethylene-responsive transcription factor (ERF) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016196776.1 | 1e-150 | ethylene-responsive transcription factor 13-like | ||||
Refseq | XP_025649806.1 | 1e-150 | ethylene-responsive transcription factor 13 | ||||
TrEMBL | A0A445DC19 | 1e-136 | A0A445DC19_ARAHY; Uncharacterized protein | ||||
STRING | XP_004492940.1 | 3e-62 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 1e-36 | ethylene-responsive element binding factor 13 |