PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.Q1JTJ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 377aa MW: 43466.2 Da PI: 6.7318

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.Q1JTJ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181	2.9e-56	7	137	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kkv++kk++l +vik+vd+yk+ePwdL++ k+ + ee++wyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++sk Araip.Q1JTJ 7 VPPGFRFHPTDEELVDYYLRKKVASKKIDL-DVIKDVDLYKIEPWDLQElcKIGSdEENDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSK 103 69**************************.9***********954555553556*********************************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ l+g++ktLvfykgrap+g+k+dW+mheyrle Araip.Q1JTJ 104 QHCLIGMRKTLVFYKGRAPNGHKSDWIMHEYRLE 137 ******************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.05E-60	5	157	IPR003441	NAC domain
PROSITE profile	PS51005	59.837	7	157	IPR003441	NAC domain
Pfam	PF02365	6.0E-29	8	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence Send to blast
MNTFSHVPPG FRFHPTDEEL VDYYLRKKVA SKKIDLDVIK DVDLYKIEPW DLQELCKIGS 60 DEENDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YSKQHCLIGM RKTLVFYKGR 120 APNGHKSDWI MHEYRLETNE NGTAPEEGWV VCRVFKKKMA TVRKIGDYDS PCSWYDEQVP 180 FMQDLESSSP IKPPIINNNH YASSYNYHQL QLPCKPEFHQ LMQYNNMNMP RHDDAADNNN 240 NFLQLPQLES PNGGISPFLQ QQDHHHQLLQ QQNSNSNYHL DQVTDWRVLD KFVASQLMSH 300 GHDDNDDDGH NNNNNVSKEV INSYSDASIL HVAQQIAMLA NGSSSSSSSR RPQISHQEYA 360 ASTSTSSSQI DLWKSSS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence Send to blast

MNTFSHVPPG FRFHPTDEEL VDYYLRKKVA SKKIDLDVIK DVDLYKIEPW DLQELCKIGS  60
DEENDWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YSKQHCLIGM RKTLVFYKGR  120
APNGHKSDWI MHEYRLETNE NGTAPEEGWV VCRVFKKKMA TVRKIGDYDS PCSWYDEQVP  180
FMQDLESSSP IKPPIINNNH YASSYNYHQL QLPCKPEFHQ LMQYNNMNMP RHDDAADNNN  240
NFLQLPQLES PNGGISPFLQ QQDHHHQLLQ QQNSNSNYHL DQVTDWRVLD KFVASQLMSH  300
GHDDNDDDGH NNNNNVSKEV INSYSDASIL HVAQQIAMLA NGSSSSSSSR RPQISHQEYA  360
ASTSTSSSQI DLWKSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-49	6	158	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00136	DAP	Transfer from AT1G12260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.Q1JTJ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016164335.1	0.0	NAC domain-containing protein 7 isoform X2
Refseq	XP_025628228.1	0.0	NAC domain-containing protein 7
Swissprot	Q9FWX2	1e-133	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A445ASR8	0.0	A0A445ASR8_ARAHY; Uncharacterized protein
STRING	XP_007155625.1	1e-163	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-117	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]