PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PVV4Q
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 337aa    MW: 37677 Da    PI: 6.5168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PVV4QgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-13146193355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  ++P +     kK++Ka+iL  A++Y+k+Lq
  Araip.PVV4Q 146 QEHVIAERKRREKLSQRFVALSAMVPGL-----KKMDKASILGDAIKYVKQLQ 193
                  6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.018143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-11146193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-18147206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-18147208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.79E-13148197No hitNo description
SMARTSM003531.7E-15149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MMEIASSNYL AEFGMEEYSS SFQEYPMMMN SFEEMLDKFE MDMQSMSSAS PECYSNSETK  60
PPPHQLQTPL NTITTTTTTA AMPSRSASPS PPKLISFEAP SLPNSSNIKN PNLMMDDHIP  120
FSAFFNYDNP PHKVLPATAR NPVQAQEHVI AERKRREKLS QRFVALSAMV PGLKKMDKAS  180
ILGDAIKYVK QLQERVQFLE EEKARKKSMV ESGVAVKRCF VFVDDEDNNE NEISAAAALL  240
DGNCNTLPEI KARVSGKDVL IRIHCHKQEC KNSSRGAREA AILSVLEKHN LTVHTTTSLP  300
FGNDTLDITI LAQMNKEYSI RTKDLVGSLR VALTQFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-15148211972Transcription factor MYC2
5gnj_B3e-15148211972Transcription factor MYC2
5gnj_E3e-15148211972Transcription factor MYC2
5gnj_F3e-15148211972Transcription factor MYC2
5gnj_G3e-15148211972Transcription factor MYC2
5gnj_I3e-15148211972Transcription factor MYC2
5gnj_M3e-15148211972Transcription factor MYC2
5gnj_N3e-15148211972Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156ERKRRE
2152157RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.PVV4Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201564.10.0transcription factor NAI1
TrEMBLA0A444ZB120.0A0A444ZB12_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.13e-50bHLH family protein