PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.PN6SP
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 572aa    MW: 63933.5 Da    PI: 4.7861
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.PN6SPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.91.1e-17946138
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                 k+ien +nrq+tfskRrn + KKA+ELSvLCd+   ++
  Araip.PN6SP  9 KKIENITNRQITFSKRRNDLVKKAYELSVLCDVMLMLL 46
                 68*****************************9765554 PP
2SRF-TF39.66.7e-13761101751
                  HHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  17 rngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                  +n + KKA+ELSvLCd+++a++ fs++++l  +ss
  Araip.PN6SP  76 KNALVKKAYELSVLCDVDIALMTFSPSNRLALFSS 110
                  899***************************99885 PP
3SRF-TF66.92e-21119161143
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
       SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 
                  k+i+n +nrq+tfskRrng++K A+ELSvLCd++va+i fs++
  Araip.PN6SP 119 KKIKNITNRQITFSKRRNGLIKTAYELSVLCDVDVALITFSPS 161
                  68***************************************97 PP
4SRF-TF73.12.3e-23330374145
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                  k+ien +nrq+tfskRrn ++KKA+ELSvLCd++va+i fs++g+
  Araip.PN6SP 330 KKIENITNRQITFSKRRNSLIKKAYELSVLCDVDVALITFSPSGR 374
                  68*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-19159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.927146IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-16150IPR002100Transcription factor, MADS-box
PfamPF003197.6E-161046IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-460111IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.63875112IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-1176112IPR002100Transcription factor, MADS-box
PfamPF003191.1E-1076105IPR002100Transcription factor, MADS-box
PROSITE profilePS5006622.778111171IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-23112170IPR002100Transcription factor, MADS-box
CDDcd001209.36E-24112170No hitNo description
SuperFamilySSF554553.14E-21113171IPR002100Transcription factor, MADS-box
PfamPF003195.2E-21120164IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-32322381IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.969322382IPR002100Transcription factor, MADS-box
CDDcd002651.41E-32323393No hitNo description
SuperFamilySSF554551.57E-27323401IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-21324344IPR002100Transcription factor, MADS-box
PfamPF003196.0E-23331375IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-21344359IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-21359380IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MERVQVPIKK IENITNRQIT FSKRRNDLVK KAYELSVLCD VMLMLLSSRS SLMADLLSSL  60
PAQKRYINLP PQECQKNALV KKAYELSVLC DVDIALMTFS PSNRLALFSS STRVKVPTKK  120
IKNITNRQIT FSKRRNGLIK TAYELSVLCD VDVALITFSP SDSPALFFSS TRIFEGDPCE  180
ITTLCEAEYR QHILQQTLKQ CVLEEEFNFS VSNQQVVLAN TVDVDGLFVG GTSNNSVEDQ  240
QSHSAVVDML STSSTLVPST NTFQLQMNPE NNSSEVCTLS PEFGQVIDIN GSSWEQFHDL  300
AGALLTIIAI TKQSKRIKVI DMGRVKLPIK KIENITNRQI TFSKRRNSLI KKAYELSVLC  360
DVDVALITFS PSGRPALFSS STSFDEILER YINLPPQEHQ KIFEGDPCEI TTLCEAEYRQ  420
HILQQTLEQV QLRKSVLEEE FNFGVSDQQV NLANTVDVDG LFVGETSNNP VEGQQSHSAV  480
VDMLGTSSTL VPSTNTLQLQ MNPDNNSLEV CTLSPDFGQV IDINGSSWEQ LHDLGNGSLS  540
IAEAREQEQL IEQYLSQFPS SDILISDQHH QI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-14322391169Myocyte-specific enhancer factor 2B
1tqe_Q2e-14322391169Myocyte-specific enhancer factor 2B
1tqe_R2e-14322391169Myocyte-specific enhancer factor 2B
1tqe_S2e-14322391169Myocyte-specific enhancer factor 2B
6c9l_A2e-14322391169Myocyte-specific enhancer factor 2B
6c9l_B2e-14322391169Myocyte-specific enhancer factor 2B
6c9l_C2e-14322391169Myocyte-specific enhancer factor 2B
6c9l_D2e-14322391169Myocyte-specific enhancer factor 2B
6c9l_E2e-14322391169Myocyte-specific enhancer factor 2B
6c9l_F2e-14322391169Myocyte-specific enhancer factor 2B
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.PN6SP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016165342.11e-125LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL66
TrEMBLA0A445C8931e-151A0A445C893_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136651922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-31AGAMOUS-like 104