PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.P795K | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 480aa MW: 55056.5 Da PI: 10.0378 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 42.4 | 2.4e-13 | 44 | 129 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y k +GFs+r+++++++ + +k+++ s+ k +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.P795K 44 KFYRNYTKAAGFSTRVRSTNRK--GN-EIKNQLITSEREKWKSKIS---PTEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 129 6****************98887..44.4566666555555554443...4799***************998879***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.7E-11 | 44 | 129 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.186 | 288 | 324 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.2E-4 | 290 | 321 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 8.0E-4 | 299 | 326 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
SRRSGVDHNF VGVFLGKVWP LSVVDDQFVP KVGMTFTTFE DAGKFYRNYT KAAGFSTRVR 60 STNRKGNEIK NQLITSEREK WKSKISPTEK TNPTAGLNCP ARIYIHTLKD VGAWIISKVV 120 LDHSHPCCPS KAEMLKQHRE LSMSISRTIE NNEEADRHIW VPIYLDHHFW AGMRSTQRSE 180 SMHSFFNKFI TRNSSLIQFV KQYDNFLGSR EQAERESDVA DFHTVIPCAT KSSIEAQFQD 240 VYTHQKFRKV QAQFRGKANC ITRLTNSAIG YSVYEVGEQV FSSIFNKFVV TYDSVAAEVK 300 CQCLLFESRG ILCRHALSVL SFEQVSQVSP RYILERWSKK VKRRHTHIKS SHDEPLLEPR 360 SKRFDQLVFR SQNICEFASE SEELTAILHR AYDNVMVEME SLKAKRKGTS SLSHEDANLE 420 SVNELQSPPR IRTRGRPKNR LGSKLDKQIA NATKKKKTKG LNELNLFDAA SVVHSNSSQY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.P795K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637178 | 0.0 | HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020997233.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A445B3W8 | 0.0 | A0A445B3W8_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 7e-34 | far-red elongated hypocotyls 3 |