PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.P6EKB

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 332aa MW: 38967.5 Da PI: 4.7736

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.P6EKB	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	42.3	2.5e-13	177	267	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngei...tkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY++YAk+v F +++++++ k+++e ++ ++eg+re++ k+ +r ++ t C+a++ v ++ + +w+v+klel+H+H+++ Araip.P6EKB 177 EFYSNYAKKVRFITKIRNTNFDKTKNELrisINLSIHYNREGYRESRVKT---VSRVKKITTARCRAMMYVMFDRqKVNWMVSKLELKHTHPCF 267 6*********999998887755544311267788899***9998...88889999******99887999**********976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.6E-10	177	267	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MDPSICEEGS YDTSYDVRNY SKSTEVNVRC LSEDDTQYVE KQMRKQVYDP ICLDAFEDHS 60 KWILEDSPPF LTLEEVNALR NDLTNMSLQS PLDDLALSIM LDQLDLKDDR DDDGANNSME 120 NANQNETNQD EKKSVDIIEL KDDDTELSHK LSDHTGIQLE KISYVELRFI LLQWAQEFYS 180 NYAKKVRFIT KIRNTNFDKT KNELRISINL SIHYNREGYR ESRVKTVSRV KKITTARCRA 240 MMYVMFDRQK VNWMVSKLEL KHTHPCFSKQ SVHYHEHIEL TMHAKCVIED NDEVGWNKEQ 300 KELEDDDIDS KGVVPCSSSS TIERQFQHEY TS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.P6EKB

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016195151.1	1e-117	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445EKM1	3e-75	A0A445EKM1_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14126	2	17