PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.NR7L2

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 512aa MW: 58405.1 Da PI: 9.2457

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.NR7L2	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53	1.2e-16	69	154	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+ +++ Araip.NR7L2 69 KFYKNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTADLNCPARIYIHTLKdVGAWIISKVVLDHSQPCC 154 6**************98887..8889*********998877...8999**********998879**********98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-14	69	155	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.062	313	349	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.6E-5	314	346	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-4	324	351	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MDDSTSDCHL NPGKVDYEFE FNEVPETLGC RSDLFWVYYI RHDWPLSVVD DQLVPKVGMT 60 FTTLEDDGKF YKNYAKAAGF STRVRSTNRK GNEIKNQLIT CSREGKWKSK ISPTEKTNPT 120 ADLNCPARIY IHTLKDVGAW IISKVVLDHS QPCCPSKAEM LKQHRELSMS IRRTIENNEE 180 AGIRPSKTYQ SFVAAAGGHR EAGMRSAQRS ESMHSFFNKF ITRNSSLIQF VKQYDNCLGS 240 REQAERESDA ADFHTVIPCA TKSSIEPQFQ DVYTHQKFRE VQANCITRLT NSTLGYSVYE 300 VEEQVSSSIF NKFVVTYDSV AVEVKCQCLL FESRGILCRH ALSVLSFERV SQVSPRYILE 360 RWSKKVKRRH THIKSSHDEP LLEPRSKRFD QLKELTAILH RAYDNVMAEM ESLKAKRKGT 420 SSLSHEDANL ESVNELQSPP RIRTRGRPKN RLGSKLDKQI ANATKKKKTK VLSEINLFDA 480 ASVVHSNSSQ YQGHVMNYQF RVPAAGDNSF AV

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MDDSTSDCHL NPGKVDYEFE FNEVPETLGC RSDLFWVYYI RHDWPLSVVD DQLVPKVGMT  60
FTTLEDDGKF YKNYAKAAGF STRVRSTNRK GNEIKNQLIT CSREGKWKSK ISPTEKTNPT  120
ADLNCPARIY IHTLKDVGAW IISKVVLDHS QPCCPSKAEM LKQHRELSMS IRRTIENNEE  180
AGIRPSKTYQ SFVAAAGGHR EAGMRSAQRS ESMHSFFNKF ITRNSSLIQF VKQYDNCLGS  240
REQAERESDA ADFHTVIPCA TKSSIEPQFQ DVYTHQKFRE VQANCITRLT NSTLGYSVYE  300
VEEQVSSSIF NKFVVTYDSV AVEVKCQCLL FESRGILCRH ALSVLSFERV SQVSPRYILE  360
RWSKKVKRRH THIKSSHDEP LLEPRSKRFD QLKELTAILH RAYDNVMAEM ESLKAKRKGT  420
SSLSHEDANL ESVNELQSPP RIRTRGRPKN RLGSKLDKQI ANATKKKKTK VLSEINLFDA  480
ASVVHSNSSQ YQGHVMNYQF RVPAAGDNSF AV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.NR7L2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445AF03	0.0	A0A445AF03_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-24	far-red elongated hypocotyls 3