PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.NPI9N
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 310aa    MW: 34908.4 Da    PI: 4.5261
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.NPI9NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.48.8e-15250294348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       WT+eE el++++ k+lG + Wk+I++   k+Rt+kq++s+ qk+l
      Araip.NPI9N 250 HWTPEEKELFLRGYKELGRK-WKRISEDYVKTRTEKQVVSHAQKVL 294
                      6*****************99.**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0023139192IPR001005SANT/Myb domain
SuperFamilySSF466892.34E-6141190IPR009057Homeodomain-like
CDDcd001672.38E-6143190No hitNo description
PROSITE profilePS500906.411143190IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.0E-5165190IPR009057Homeodomain-like
PROSITE profilePS5129418.756243298IPR017930Myb domain
SuperFamilySSF466895.46E-12244297IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-11246293IPR006447Myb domain, plants
SMARTSM007171.6E-11247296IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.8E-10250296IPR009057Homeodomain-like
PfamPF002497.0E-12250294IPR001005SANT/Myb domain
CDDcd001671.14E-9251294No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MELWNVMDLP VFDMGDDQLP EFQYLPPLTD AELFAADVGA PQFQSPSSSN VPLPEFPIGN  60
QQPLPQPLPL PEFAANVPPP QFAADMCGYQ QPQAQPETPQ PQLPAEFPVN LPLPEFPAYV  120
PLPQSAADVC GYQQPQAQPE PFWSEDDNKE FELVLAECLP EALKNRWDDV AACLPGKTPA  180
QIQERFQKLI TDINLIHNSY INLHHTSIAP AAPHNMPAPP TTLERNPLSL PGTSEQNQPA  240
MTSERKKTVH WTPEEKELFL RGYKELGRKW KRISEDYVKT RTEKQVVSHA QKVLKKLAEQ  300
NRRNNIGDES
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.NPI9N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020964035.10.0uncharacterized protein LOC110265393
TrEMBLA0A444XWU71e-167A0A444XWU7_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2080624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-22MYB family protein