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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.NGJ26 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 242aa MW: 28093 Da PI: 8.5915 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50.1 | 9.1e-16 | 50 | 136 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++Y+k +GFs++++++++ ++i++r Cs+eg+ +++ + + +t+++ +C ++ v+ +k g w + k++l+H+H+++p Araip.NGJ26 50 KFYKHYSKLAGFSTKIRNTTRD--GDKIKNRLIICSREGRLKSKISP---TLKTNPSAGLNCPTRIYVHIMKdVGLWTIFKVVLNHSHPCCP 136 6****************98776..8889************9998776...999******************999***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.5E-13 | 50 | 136 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MNESTSNQLN ECDLDDSSET HQFDETDYVV DEKFVPKVGM IFKTLEEARK FYKHYSKLAG 60 FSTKIRNTTR DGDKIKNRLI ICSREGRLKS KISPTLKTNP SAGLNCPTRI YVHIMKDVGL 120 WTIFKVVLNH SHPCCPDQAE ILKQHRELSM FVRRTIETHE EARIRLSKTY QSFVAAAGSH 180 PCTVFGSPDL ISLVWFTELS EDRHIWILVY LDHHFWAGMS TQRSESMHSF FNKFITRNSS 240 LR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.NGJ26 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016172294.1 | 1e-114 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445B8J0 | 1e-130 | A0A445B8J0_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 8e-12 | FAR1 family protein |