PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.NA6B3
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 265aa    MW: 29803.5 Da    PI: 8.2558
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.NA6B3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.6e-08160207455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR +iN+++  L+ ++P +     k +  a +Le+ ++Y++sLq
  Araip.NA6B3 160 THSLAERVRRGKINEKLKFLQNIVPGC----YKTMGMAIMLEEIINYVQSLQ 207
                  8*************************9....35599999***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.85E-10154211No hitNo description
SuperFamilySSF474597.98E-16154223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.5156206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15156219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-6160207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-6162212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MAEFTADLHS FRPSFPFLDI NTMELTNGFK GVMNVNSHIL NNNSSLHMQD FLMPFNTSHS  60
FISSPESEFS GLVHYVNHSD LPSSLTISSA DNEIQQGKKR KAVDTPDTMS ANSTPAVSES  120
GSNTKNNYGR GKRGKKNETE EKKSKEVVHV RARRGQATDT HSLAERVRRG KINEKLKFLQ  180
NIVPGCYKTM GMAIMLEEII NYVQSLQHQV EFLSMKLNAA SAFYDFNSQT DAFETVLRAR  240
ASEAKELAKN EREGHGIQPT WPYCF
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.NA6B3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193391.10.0transcription factor BEE 1-like
RefseqXP_025644263.10.0transcription factor BEE 1-like
SwissprotQ8GWK73e-55BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A445A2K60.0A0A445A2K6_ARAHY; Uncharacterized protein
STRINGXP_007154151.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33603467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18400.12e-56BR enhanced expression 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]