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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.N9QES | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | GRAS | ||||||||
Protein Properties | Length: 670aa MW: 74210.3 Da PI: 5.8367 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 443 | 2.1e-135 | 306 | 669 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlt 97 lv+lLl+cAeav++++ la+++L++l+ ++p gd+mqR+a++fte L arla s+s+ ++ p+s+ +++ns e l+++++ ++++P++kf+h+t Araip.N9QES 306 LVHLLLACAEAVAKEEYMLARRYLQHLNRVVTPLGDSMQRVASCFTESLTARLATtSTSNNANPTPSSTFPHSNSMEILKIYQIVYQACPYIKFAHFT 403 68****************************************************97777888888999999999************************ PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195 aNqaI ea+egeervH+iD+di qG QWpa++qaLa+R++g+p lRiTgvg+ s e+++etg+ L+++A++l++pfef++ v ++le+l++++++ Araip.N9QES 404 ANQAIFEAFEGEERVHVIDLDILQGYQWPAFMQALAARSSGAPFLRITGVGP----SIESVKETGRCLTELAHSLRIPFEFHP-VGEQLENLKPHMFN 496 ****************************************************....9**************************.7************* PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 + gEalaVn v qlhr++ +l ++L ++++ P +v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p+es +r+kvE+ ++++e Araip.N9QES 497 RRVGEALAVNTVNQLHRVP--GNALG----NLLTMIRDQAPSIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPESAQRAKVEQYIFAPE 588 ******************9..34444....6******************************************************************* PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i+n+vaceg+er+erhe+lekWr+ +e GFk vpls +a++q k ll ++ dgyr+ e++g+l+lgW+dr+++++SaWr Araip.N9QES 589 IRNIVACEGQERVERHERLEKWRKIMEGKGFKGVPLSPNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAIIAASAWR 669 ********************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.535 | 280 | 649 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.2E-133 | 306 | 669 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 670 aa Download sequence Send to blast |
MINSLCGSSV SLKSENSSTK LQPTSSNDSV LQSNKKNNAT QSSVDLLEQN NNSTLTPPSL 60 NLPGLKFDLD GDVEVQSPDS SMWESFFSDQ LDTDFMMCSP VRNVPSPQQA STYNCNYNYA 120 HSMQAQSFSG CSPPRFLAQI GAYNSSGGGG GGKGKGLSPL HRVFNSPNNQ YMQHVENLSL 180 PAIEEFLEEF QQGEYSSITA ANNSSKVGDG SDIVGSSSEC FELGNLIPSA SEESSVQENE 240 IYHHMGSMVS ASLSQALQQE RYHEKQQKQQ VQQQQHPHSH QHHQNLMVPI PLGLEQVVEQ 300 ESGLQLVHLL LACAEAVAKE EYMLARRYLQ HLNRVVTPLG DSMQRVASCF TESLTARLAT 360 TSTSNNANPT PSSTFPHSNS MEILKIYQIV YQACPYIKFA HFTANQAIFE AFEGEERVHV 420 IDLDILQGYQ WPAFMQALAA RSSGAPFLRI TGVGPSIESV KETGRCLTEL AHSLRIPFEF 480 HPVGEQLENL KPHMFNRRVG EALAVNTVNQ LHRVPGNALG NLLTMIRDQA PSIVTLVEQE 540 ASHNGPYFLG RFLEALHYYS AIFDSLDATF PPESAQRAKV EQYIFAPEIR NIVACEGQER 600 VERHERLEKW RKIMEGKGFK GVPLSPNAVT QSKILLGLYS CDGYRLTEDK GCLLLGWQDR 660 AIIAASAWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 1e-99 | 313 | 668 | 25 | 377 | Protein SCARECROW |
5b3h_D | 1e-99 | 313 | 668 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.N9QES |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025658723.1 | 0.0 | scarecrow-like protein 23 isoform X1 | ||||
Swissprot | G7L166 | 0.0 | RAM1_MEDTR; GRAS family protein RAM1 | ||||
TrEMBL | A0A444YSH3 | 0.0 | A0A444YSH3_ARAHY; Uncharacterized protein | ||||
STRING | XP_007161687.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9470 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 5e-98 | RGA-like 1 |
Publications ? help Back to Top | |||
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