PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.N9QES
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GRAS
Protein Properties Length: 670aa    MW: 74210.3 Da    PI: 5.8367
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.N9QESgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4432.1e-1353066691374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                  lv+lLl+cAeav++++  la+++L++l+  ++p gd+mqR+a++fte L arla  s+s+ ++  p+s+ +++ns e l+++++ ++++P++kf+h+t
  Araip.N9QES 306 LVHLLLACAEAVAKEEYMLARRYLQHLNRVVTPLGDSMQRVASCFTESLTARLATtSTSNNANPTPSSTFPHSNSMEILKIYQIVYQACPYIKFAHFT 403
                  68****************************************************97777888888999999999************************ PP

         GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  aNqaI ea+egeervH+iD+di qG QWpa++qaLa+R++g+p lRiTgvg+    s e+++etg+ L+++A++l++pfef++ v ++le+l++++++
  Araip.N9QES 404 ANQAIFEAFEGEERVHVIDLDILQGYQWPAFMQALAARSSGAPFLRITGVGP----SIESVKETGRCLTELAHSLRIPFEFHP-VGEQLENLKPHMFN 496
                  ****************************************************....9**************************.7************* PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                   + gEalaVn v qlhr++    +l     ++L ++++  P +v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p+es +r+kvE+ ++++e
  Araip.N9QES 497 RRVGEALAVNTVNQLHRVP--GNALG----NLLTMIRDQAPSIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPESAQRAKVEQYIFAPE 588
                  ******************9..34444....6******************************************************************* PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  i+n+vaceg+er+erhe+lekWr+ +e  GFk vpls +a++q k ll  ++ dgyr+ e++g+l+lgW+dr+++++SaWr
  Araip.N9QES 589 IRNIVACEGQERVERHERLEKWRKIMEGKGFKGVPLSPNAVTQSKILLGLYSCDGYRLTEDKGCLLLGWQDRAIIAASAWR 669
                  ********************************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.535280649IPR005202Transcription factor GRAS
PfamPF035147.2E-133306669IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MINSLCGSSV SLKSENSSTK LQPTSSNDSV LQSNKKNNAT QSSVDLLEQN NNSTLTPPSL  60
NLPGLKFDLD GDVEVQSPDS SMWESFFSDQ LDTDFMMCSP VRNVPSPQQA STYNCNYNYA  120
HSMQAQSFSG CSPPRFLAQI GAYNSSGGGG GGKGKGLSPL HRVFNSPNNQ YMQHVENLSL  180
PAIEEFLEEF QQGEYSSITA ANNSSKVGDG SDIVGSSSEC FELGNLIPSA SEESSVQENE  240
IYHHMGSMVS ASLSQALQQE RYHEKQQKQQ VQQQQHPHSH QHHQNLMVPI PLGLEQVVEQ  300
ESGLQLVHLL LACAEAVAKE EYMLARRYLQ HLNRVVTPLG DSMQRVASCF TESLTARLAT  360
TSTSNNANPT PSSTFPHSNS MEILKIYQIV YQACPYIKFA HFTANQAIFE AFEGEERVHV  420
IDLDILQGYQ WPAFMQALAA RSSGAPFLRI TGVGPSIESV KETGRCLTEL AHSLRIPFEF  480
HPVGEQLENL KPHMFNRRVG EALAVNTVNQ LHRVPGNALG NLLTMIRDQA PSIVTLVEQE  540
ASHNGPYFLG RFLEALHYYS AIFDSLDATF PPESAQRAKV EQYIFAPEIR NIVACEGQER  600
VERHERLEKW RKIMEGKGFK GVPLSPNAVT QSKILLGLYS CDGYRLTEDK GCLLLGWQDR  660
AIIAASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-9931366825377Protein SCARECROW
5b3h_D1e-9931366825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.N9QES
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025658723.10.0scarecrow-like protein 23 isoform X1
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A444YSH30.0A0A444YSH3_ARAHY; Uncharacterized protein
STRINGXP_007161687.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-98RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]