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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.N9B34 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 410aa MW: 45984.2 Da PI: 9.0267 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 58.8 | 1.8e-18 | 61 | 147 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ +ei+++ +Cskegk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.N9B34 61 KFYRNYAKAAGFSTRVRSTNRK--GNEIKNQLITCSKEGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 147 6****************98887..8889*************998877...8999**************998879***************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.3E-16 | 61 | 147 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.099 | 239 | 275 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.3E-4 | 241 | 272 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0021 | 250 | 277 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MDHSTSDCQL NPGEVDYEFE SNEVPEPVYL QFMALKPLSV VDDELVPKVG MTFTTLEDAG 60 KFYRNYAKAA GFSTRVRSTN RKGNEIKNQL ITCSKEGKWK SKISPTEKTN PTAGLNCPAR 120 IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MEQAERESDA ADFHTAIPCA 180 TKSSIEAQFQ DAYTHAKFRE VQAQFRGKAN CITRLKNSAL GYSVYEVGEQ DTSSIFNKFV 240 VTYDSVAAEV KCQCLLFKSR GILCRHALSV LSFEQVSQVS PRYILERWSK KELTAILHRA 300 YDNIMAEMES LKAKRKGTSS LSHEDANLES INELQSPPRI RTRGRPKNRL GSKLDKQIAN 360 ATKKKKTKVL SEINLFDAAS AVHSNSSQYQ GHVMNYQFRI PAAGDNSLGV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.N9B34 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ637178 | 1e-160 | HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020986710.1 | 1e-155 | protein FAR-RED ELONGATED HYPOCOTYL 3-like | ||||
TrEMBL | A0A445A4U9 | 0.0 | A0A445A4U9_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 2e-16 | FAR1 family protein |