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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.N53HM | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 192aa MW: 22284.2 Da PI: 9.9321 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.5e-19 | 98 | 152 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Le+ F +++++ ++++eLAkkl+L rqV vWFqNrRa+ k Araip.N53HM 98 RKKLRLTKQQSALLEDSFIHHSTLNPKQKQELAKKLNLRARQVEVWFQNRRARTK 152 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 114.5 | 6.4e-37 | 98 | 186 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+k+q++lLE+sF ++++L+p++K+ela++L+l++rqv+vWFqnrRARtk+kq+E ++e Lk+++++l+een+rL+ke ++L++ Araip.N53HM 98 RKKLRLTKQQSALLEDSFIHHSTLNPKQKQELAKKLNLRARQVEVWFQNRRARTKLKQTEAECEILKKWCERLREENKRLQKELQHLKS 186 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.151 | 94 | 154 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.54E-18 | 95 | 162 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 9.7E-16 | 96 | 158 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.11E-11 | 97 | 155 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-17 | 98 | 152 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.0E-16 | 98 | 152 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 129 | 152 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 7.5E-9 | 154 | 188 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 5.5E-9 | 154 | 192 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MMMAFSNNND QELGLGLGLS LVHGENCRQK KKEEEEGPCS NIKAYPSLTL GPEQDSRSSQ 60 SAGVSSFSNS SSSIKRERDE EFLLDLDEEE NKKNGNPRKK LRLTKQQSAL LEDSFIHHST 120 LNPKQKQELA KKLNLRARQV EVWFQNRRAR TKLKQTEAEC EILKKWCERL REENKRLQKE 180 LQHLKSMKTN NK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 154 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.N53HM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016165761.2 | 1e-137 | homeobox-leucine zipper protein HAT9 isoform X1 | ||||
Refseq | XP_020962274.1 | 1e-137 | homeobox-leucine zipper protein HAT9 isoform X3 | ||||
Refseq | XP_025668891.1 | 1e-137 | homeobox-leucine zipper protein HAT9 isoform X1 | ||||
Swissprot | P46603 | 1e-45 | HAT9_ARATH; Homeobox-leucine zipper protein HAT9 | ||||
Swissprot | P46665 | 2e-45 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A445C8F9 | 1e-136 | A0A445C8F9_ARAHY; Uncharacterized protein | ||||
STRING | XP_010109438.1 | 2e-50 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-44 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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