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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.N3AJU | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 280aa MW: 31640.8 Da PI: 9.2334 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 65.1 | 2e-20 | 90 | 178 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y eYAk + F vrk s k ++g+++++ f+C+++g +++++ + ++++r ++aetrt+C+ak++v ++k +gkw++++++++HnH+l+ Araip.N3AJU 90 YVEYAKATRFAVRKGDSIKD-DEGNVVRKFFYCNQQGLPKKKHYErADRKRAHKAETRTSCNAKFVVFLDKqNGKWRMKTFVQDHNHDLT 178 99**************9998.7788*************999988857888889**************99999***************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.6E-18 | 90 | 178 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MDLALNNGFE WIVAAKGTQT FQINRLMDGV VSLMRKRSLK GDEGGRLPSS ESPGSSGNQI 60 SDDVDTSMLS IAAALADVEF HGVEEAYARY VEYAKATRFA VRKGDSIKDD EGNVVRKFFY 120 CNQQGLPKKK HYERADRKRA HKAETRTSCN AKFVVFLDKQ NGKWRMKTFV QDHNHDLTLP 180 AFTNVMASHS NINEELEKDA LSMRLELKKW CKDAKSRSFH DSDGDGCDIL DPKIIKSKGA 240 PRSTSNGRMG RRCKRCHGFG HDRRNCTTNK EDILDEVLLM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.N3AJU |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029145735.1 | 5e-95 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A445EU99 | 2e-87 | A0A445EU99_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19132 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-08 | FAR1 family protein |