PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.N1N85

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 585aa MW: 67492 Da PI: 9.2089

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.N1N85	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.6	1.5e-16	65	151	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk++GF ++++ +++ +++ +++ +C++egkr+++ + ++t++ t+ + a++ ++++k+g w ++k+ l+H+H++ Araip.N1N85 65 QFYQNYAKRIGFVTKIRFTRRVGKDKVPKNQMITCNREGKRKSRVSP---IEKTNPRTNYNFPARISIRLNKEGLWIISKVCLDHSHPCD 151 6****************************************9877...9999*******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-14	65	151	IPR004330	FAR1 DNA binding domain
Pfam	PF04434	2.7E-5	331	364	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.73	331	367	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.3E-6	342	369	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 585 aa Download sequence Send to blast
MAFSHAPLQG TSRRAPQAGY ALLRSQYVQI LHPKLYSKAF LFFTLRMHDV PKVGMCFGTI 60 EDANQFYQNY AKRIGFVTKI RFTRRVGKDK VPKNQMITCN REGKRKSRVS PIEKTNPRTN 120 YNFPARISIR LNKEGLWIIS KVCLDHSHPC DPEMAKLLTR NREMTMHMCR VIERNDEVGV 180 RPNKTYQVLV GEAGDIYEER HRWVPIFLDN FFWAGMRSTQ RSESMHSYFD KFINNKSLLI 240 QFVKQYDNCL GWKEQQEREA DVEDYKSIIP CATNSLIEKQ FQGAYTNAKF KEVQKQFRKK 300 ANCILHLMKV VSTSKVYSIL EDVSTSKERV YEVNYNAETK DITCMCQMFE SRGILCRHSL 360 VVLGHERVRE IPRSYILDRW SKLVKRRHSD IKSSHDPSLL DPKTEMFDDL CSHSISVAQF 420 ASQTKETSDI LHRYLDMAMA ECQKHVANSS SNANELDNLL TLEDGGKDGG KDALSIFVGG 480 CIISIQDIKS PPYVSTKGRP TNRLRSEKDK MIKKKTEAKK RKSEITEKED NQHIGDSQSL 540 PFNEQLQDAN YNVNEGFESD SMGGSMGEFM SLLNSIHSYQ FSNVD

Sequence ? help Back to Top

Protein Sequence Length: 585 aa Download sequence Send to blast

MAFSHAPLQG TSRRAPQAGY ALLRSQYVQI LHPKLYSKAF LFFTLRMHDV PKVGMCFGTI  60
EDANQFYQNY AKRIGFVTKI RFTRRVGKDK VPKNQMITCN REGKRKSRVS PIEKTNPRTN  120
YNFPARISIR LNKEGLWIIS KVCLDHSHPC DPEMAKLLTR NREMTMHMCR VIERNDEVGV  180
RPNKTYQVLV GEAGDIYEER HRWVPIFLDN FFWAGMRSTQ RSESMHSYFD KFINNKSLLI  240
QFVKQYDNCL GWKEQQEREA DVEDYKSIIP CATNSLIEKQ FQGAYTNAKF KEVQKQFRKK  300
ANCILHLMKV VSTSKVYSIL EDVSTSKERV YEVNYNAETK DITCMCQMFE SRGILCRHSL  360
VVLGHERVRE IPRSYILDRW SKLVKRRHSD IKSSHDPSLL DPKTEMFDDL CSHSISVAQF  420
ASQTKETSDI LHRYLDMAMA ECQKHVANSS SNANELDNLL TLEDGGKDGG KDALSIFVGG  480
CIISIQDIKS PPYVSTKGRP TNRLRSEKDK MIKKKTEAKK RKSEITEKED NQHIGDSQSL  540
PFNEQLQDAN YNVNEGFESD SMGGSMGEFM SLLNSIHSYQ FSNVD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.N1N85

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016177812.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445B541	0.0	A0A445B541_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	2e-34	far-red elongated hypocotyls 3