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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.MR2TJ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | FAR1 | ||||||||
Protein Properties | Length: 186aa MW: 21197.4 Da PI: 4.7412 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 57.4 | 4.7e-18 | 101 | 186 | 1 | 81 |
FAR1 1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 ++YneY++ GFsvr+sk ++ +g+i+++ fvCs+eg+r++++ + +++++ +r+ tr+gC+a++k + ++ +g+w v+++ Araip.MR2TJ 101 NYYNEYGRIKGFSVRRSKVGRRikqGADGKIIWQIFVCSREGERDRKHMQrEDRKKDPRPITRCGCEARIKAHVDDaSGRWFVEQF 186 69**************9988776557899***************99998856677789*****************99******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.7E-16 | 101 | 186 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MDQTGQRDSQ DVWDYSCVFV VMVDNADVLF AHCPNGFVEP SYDFSSNFDR VHASQDADDG 60 MSGETVPVEE AKVMDSSAAD ADIDAEDVLT TEFTSLQAAY NYYNEYGRIK GFSVRRSKVG 120 RRIKQGADGK IIWQIFVCSR EGERDRKHMQ REDRKKDPRP ITRCGCEARI KAHVDDASGR 180 WFVEQF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.MR2TJ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016192260.1 | 6e-88 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_025639519.1 | 6e-88 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A444XQY9 | 1e-109 | A0A444XQY9_ARAHY; Uncharacterized protein | ||||
STRING | Traes_5DL_FC7D15A05.1 | 2e-18 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-13 | FAR1-related sequence 5 |