PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.MQ9VE
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 502aa    MW: 56886.8 Da    PI: 8.0187
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.MQ9VEgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1102.34.6e-3285176291
         FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                  fYn+YA+++GFs+r+s s++s+r+g i++r fvC keg+r e++k+  + + +r+raetr+gCka+l+vk + +g+w+v+++++eHnHel+p
  Araip.MQ9VE  85 FYNSYARRIGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRMEKEKNslDGRVKRPRAETRVGCKAMLVVKIQVSGRWVVSSFVKEHNHELVP 176
                  9*****************************************999988889999************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-3085176IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.534290326IPR007527Zinc finger, SWIM-type
PfamPF044343.7E-8299324IPR007527Zinc finger, SWIM-type
SMARTSM005758.8E-7301328IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MEFESLSLAN EVIEFDMIGL GDDGAIDIEH HVEDDDDYIS VDNVFAATAA TNIAATVGPQ  60
IPIGDTNLEP YQGMEFESEE AAKAFYNSYA RRIGFSTRVS MSRRSRRDGA IIQRSFVCAK  120
EGFRMEKEKN SLDGRVKRPR AETRVGCKAM LVVKIQVSGR WVVSSFVKEH NHELVPPDKV  180
HCLRSHRHVS GPAKSLIDTL QGAGIGPSGI MSALIKEYGG ISNIGFTERD FLKTPSPMEK  240
QAAGIYTKRL FIKFQEELVE TLTYLANKVG EEEITCVYRV AKYGDIHRAY FVRFNSFKMK  300
VTCSCQMFEF LGLVCRHILT VFRVTNILTL PSHYILKRWT RNAKSGVILD EHTPDLLNGA  360
RESLTIRYNN LRHEALKYVD DGIRSPRVYD VAMSALQEAA NKVARATKND GRLVVSNGTY  420
KEDLQWNNEA TTSYRDPETS LQQSSSKDDH DRTIEKLTRQ LDRAQRKCEV YRSNLLSILK  480
DMEEQKLELS VKVQNIKLGM KD
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.MQ9VE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016201346.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_016201347.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X2
SwissprotQ9SZL81e-86FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A200PR761e-166A0A200PR76_9MAGN; FAR1 DNA binding domain
STRINGGLYMA11G09400.11e-140(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-89FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]