PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.MH7E2
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 404aa    MW: 46397.7 Da    PI: 8.2498
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.MH7E2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.64.1e-1861147191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cskegk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.MH7E2  61 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSKEGKWKSKISP---TKKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 147
                  6***************998776..8889*************998877...999***************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.9E-1561147IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.889318354IPR007527Zinc finger, SWIM-type
PfamPF044344.7E-4320351IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDHSTSDCQL NPGEVDYEFE SNEVPEPVYL QFMALKPLSV VDDELVPKVG MTFTTLEDAG  60
KFYRNYAKAA GFSTRVRCTN RKGNEIKNQL ITCSKEGKWK SKISPTKKTN PTAGLNCPAR  120
IYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRTIENN EEAVCVWVYS  180
ADLYEDRHIW VSIYLDHHFW AGMRSTQRSE SMHSFFNKFI TRNSSLIQFV KQYDNCLGSR  240
EQVERESDAA DFHTVIPCAT KSSIEAQFQD AYTHQKFREV QAQFRGKANC ITRLMNSALG  300
YSVYEVGEQV SSSIFNKFVV TYDSVAAEVK CQCLMLESRG ILCRHALSVL SFEQASQVSP  360
RYILERWSKK VKRRHTHIKS SHDEPLMEPR SKRGFEQEDV QKIG
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.MH7E2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020981527.11e-145protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.22e-30far-red elongated hypocotyls 3