PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.MA0JY | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 379aa MW: 42988.4 Da PI: 4.5998 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.5 | 3.2e-10 | 301 | 341 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN ++ L++l+P+ +K++ +++Le+Av+Y+k Lq Araip.MA0JY 301 RKRRERINARLRILQSLVPNG-----TKVDISTMLEEAVNYVKFLQ 341 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.659 | 291 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-13 | 296 | 355 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-11 | 297 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.6E-11 | 297 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.66E-11 | 300 | 345 | No hit | No description |
Pfam | PF00010 | 1.9E-7 | 301 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048766 | Biological Process | root hair initiation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MEFLGAFSNN IELDCFKMFS TEKEHDFTYT TTTSQLFLDQ RSSLLVGEDD ELNFGLVQST 60 ISSNLISDEN EHYLFHSLDA NPNTKMLHYK SQEESSYNSS NLSGGDTNFF NANMDLTTNY 120 YYSSNYHDDH VLANDVSISM ELCMEEKNLA CFAPSMEDND DHGLLENYDH YQCHQMENVD 180 VVQLKRKIVE VPELDVSADE NNTSNGYKNQ KKKIFVAKDE QDCMKNEKSR KRKVVRNGNE 240 GEERNNNVGL DGQSSSSNIN ICEDDNASEE NNGGVTSVSH SNGKTRTIRG TAADPQSLYA 300 RKRRERINAR LRILQSLVPN GTKVDISTML EEAVNYVKFL QLQIKLLSSD DLWMYAPLAY 360 NGLDIGLKLN NLKNFSPSP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 210 | 232 | KKKIFVAKDEQDCMKNEKSRKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.MA0JY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016207870.2 | 0.0 | uncharacterized protein LOC107648570 | ||||
Refseq | XP_025657597.2 | 0.0 | uncharacterized protein LOC112754239 | ||||
Swissprot | Q8LEG1 | 2e-50 | BH054_ARATH; Transcription factor bHLH54 | ||||
TrEMBL | A0A445CXL9 | 0.0 | A0A445CXL9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA17G35423.1 | 2e-93 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 3e-52 | bHLH family protein |