PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.M6R3N
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 536aa    MW: 57911.1 Da    PI: 4.9536
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.M6R3NgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.6e-09351399355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Araip.M6R3N 351 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 399
                  58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-17346416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.03E-11346403No hitNo description
PROSITE profilePS5088815.485348398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16349415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-6351399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10354404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MSDKEKFELD RKEDPMNYST GMASDRRFGG SNLLNSSVGL AGRGDLNGSS SCSSASLVDS  60
FGPNFWDTPT NSQNLGFCGI NVHNSGSSLN PIEIRKDGFG FGRGGHDHGT LEMGWNQGNG  120
FIPNESAMFP QNLSRFPSDS GFIERATRFS CFGGGDFGDM VNAYGIPQSM GPYAGTGGEA  180
IHQARDGGQP QESNPNEAEA VKDATPSVEY LATKASPLKN DKRSENHVMP QNEGQQGPSR  240
PPNETDRAKS SDDGGVQDDS PMLDGVSDEP CLKGLDSKKR KRIGQDADND KAVELPTEGA  300
GDISESQQKG EQEPTPTNKA SGKNAKQGTQ VSDPPKEEYI HVRARRGQAT NSHSLAERVR  360
REKISERMKF LQDLVPGCSK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPRLDFDI  420
EGLIPKDILH QRPGPSALGF PLEMSMAFAP LHPSQPGLIQ PTLPSMANSS DILRRTVHPQ  480
LASPASGSFK EPNQVPDVWE DELHNVVQMS FATTTAPMST QDADGTVAAT QMKVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271280LKGLDSKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.M6R3N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150437e-33AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020979533.10.0transcription factor bHLH49
RefseqXP_025652698.10.0transcription factor bHLH49
TrEMBLA0A444Z3V70.0A0A444Z3V7_ARAHY; Uncharacterized protein
STRINGGLYMA01G09400.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-100bHLH family protein