PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.M0HLL

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 412aa MW: 48348.3 Da PI: 9.1606

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.M0HLL	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.1	5.1e-12	27	112	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfY++Y+k +GFs++++++++ ++i+++ ++eg+ +++ + + +t+++ +C k+ v+ k g w ++k++l+H+H+++ Araip.M0HLL 27 KFYKHYSKLAGFSTKIRNTTRD--GDKIKNQLIIFTREGRWKSKISP---TLKTNPSAGLNCPTKIYVHILKdVGLWTISKVVLNHSHPCC 112 6**************98776..77789999999999998766...999*************98879************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-9	27	112	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.025	266	302	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.5E-4	277	304	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MQTSCFVDEK FVPKVGMIFK TLEETGKFYK HYSKLAGFST KIRNTTRDGD KIKNQLIIFT 60 REGRWKSKIS PTLKTNPSAG LNCPTKIYVH ILKDVGLWTI SKVVLNHSHP CCSDRAEMLK 120 QHREFNMFVQ LYEDQHIWIL IYLDHHFWTG MRSTQRSESL HSFFNKFITR NSSLRQFVKQ 180 YDNCLASREQ TEREFDVADF YTVIPCATKS AIEAQFQHVY IHEKCRKVQA QFRGKVNCIT 240 RSMHSTLSFT TYEVIEQVSN FTFNKFFVTY DAVSQEVKCQ CLLFESKGIL CRHSLSVLSF 300 ERVDKVAPKY ILERWSKNIK RRYIHIKSSQ DEPLLEPRSK RFDELVFRSH NICEFAFESE 360 ELTRILHRVF DKLNLLDAGS SIQSSSTLYN APDMNYPRGD YTKSSGVSET EY

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MQTSCFVDEK FVPKVGMIFK TLEETGKFYK HYSKLAGFST KIRNTTRDGD KIKNQLIIFT  60
REGRWKSKIS PTLKTNPSAG LNCPTKIYVH ILKDVGLWTI SKVVLNHSHP CCSDRAEMLK  120
QHREFNMFVQ LYEDQHIWIL IYLDHHFWTG MRSTQRSESL HSFFNKFITR NSSLRQFVKQ  180
YDNCLASREQ TEREFDVADF YTVIPCATKS AIEAQFQHVY IHEKCRKVQA QFRGKVNCIT  240
RSMHSTLSFT TYEVIEQVSN FTFNKFFVTY DAVSQEVKCQ CLLFESKGIL CRHSLSVLSF  300
ERVDKVAPKY ILERWSKNIK RRYIHIKSSQ DEPLLEPRSK RFDELVFRSH NICEFAFESE  360
ELTRILHRVF DKLNLLDAGS SIQSSSTLYN APDMNYPRGD YTKSSGVSET EY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.M0HLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025675338.1	1e-151	protein FAR1-RELATED SEQUENCE 1
TrEMBL	A0A444ZLV2	0.0	A0A444ZLV2_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-31	far-red elongated hypocotyls 3