PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.LYX6B
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HD-ZIP
Protein Properties Length: 761aa    MW: 81844.9 Da    PI: 5.5252
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.LYX6BgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.1e-2083138156
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R++ k
  Araip.LYX6B  83 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQVK 138
                  688999**********************************************9877 PP
2START1984.2e-622744891206
                  HHHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
        START   1 elaeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                  ela +a++elv +a+ +ep+W ++        + +n+de++++f+++ +     +++ea+r+++vv+m++++lve+l+d++  W++++     +a t+
  Araip.LYX6B 274 ELAVAAMEELVGMAQMGEPLWLTMTsidggtsTVLNEDEYVRTFPRGIGpkpagFRSEASRETAVVIMNHVNLVEILMDVN-NWSTMFSgivsRAITI 370
                  57899********************9****9999************999********************************.**************** PP

                  EEECTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
        START  83 evissggalqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                  ev+s+g a    ++elq++splvp R+++fvRy++q+ +g+w++vdvS+d+ ++  +     R++++pSg+li++++ng+skvtwvehv++++r +++
  Araip.LYX6B 371 EVLSTGVA--GNYNELQVPSPLVPtRESYFVRYCKQHVDGSWAVVDVSLDHLRPGLT----PRSRRRPSGCLIHEMPNGYSKVTWVEHVEVDDRGVPN 462
                  ******55..66799***************************************974....78888******************************** PP

                  HHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 180 llrslvksglaegaktwvatlqrqcek 206
                  l+++lv+sg+a+gak+wvatl+rqce+
  Araip.LYX6B 463 LYKQLVNSGHAFGAKRWVATLDRQCER 489
                  *************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-2367138IPR009057Homeodomain-like
SuperFamilySSF466892.59E-1970140IPR009057Homeodomain-like
PROSITE profilePS5007116.81180140IPR001356Homeobox domain
SMARTSM003891.2E-1881144IPR001356Homeobox domain
PfamPF000461.0E-1783138IPR001356Homeobox domain
CDDcd000861.61E-1883140No hitNo description
PROSITE patternPS000270115138IPR017970Homeobox, conserved site
PROSITE profilePS5084844.451265492IPR002913START domain
SuperFamilySSF559611.51E-34267491No hitNo description
CDDcd088752.14E-118269488No hitNo description
SMARTSM002342.4E-55274489IPR002913START domain
PfamPF018525.3E-52275489IPR002913START domain
Gene3DG3DSA:3.30.530.202.7E-5338488IPR023393START-like domain
SuperFamilySSF559616.25E-25508751No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MFQPNMTEAV GGLHYHHQYH PFDMAQNTTT SESDVPRIRE DELFDSATKS GSENLEVEGG  60
GGSGGGGEGG SAGEDQNPRP NKKKRYHRHT QHQIQEMEAF FKECPHPDDK QRKELSRELG  120
LEPLQVKFWF QNKRTQVKTQ TERSENSQLR AENEKLRADN MRYREALSNA SCPSCGGPTA  180
IGEMSFDEHH LRLENARLRE EIDRISAIAA KYVGKPVVNY SNLSPSLPPR PLELGVSGGS  240
GGFGGGSDMY SGGAGDFLRS INGPSEADKP LIIELAVAAM EELVGMAQMG EPLWLTMTSI  300
DGGTSTVLNE DEYVRTFPRG IGPKPAGFRS EASRETAVVI MNHVNLVEIL MDVNNWSTMF  360
SGIVSRAITI EVLSTGVAGN YNELQVPSPL VPTRESYFVR YCKQHVDGSW AVVDVSLDHL  420
RPGLTPRSRR RPSGCLIHEM PNGYSKVTWV EHVEVDDRGV PNLYKQLVNS GHAFGAKRWV  480
ATLDRQCERL ASAMATNVPT VDVGVITNQE GRKSMLKLAE RMVMSFCGGV SASTAHTWTT  540
LNGTGVDDVR VMTRKSVDDP GRPPGIVLSA ATSFWLPVPP KTAFDFLRDE NSRSEWDILS  600
NGGAVQEMAH IANGRDTGNC VSLLRVNSAN SSQSNMLILQ ESCTDSTGSF VVYAPVDIVA  660
MNVVLNGGDP DYVALLPSGF AILPDGSSGG CGTGIGGETN GPTGGGGGGG GGSLLTVAFQ  720
ILVDSVPTAK LSLGSVATVN SLISCTVERI KASLSGDPAS L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1702712TGGGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.LYX6B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016188415.10.0homeobox-leucine zipper protein HDG2
RefseqXP_025643275.10.0homeobox-leucine zipper protein HDG2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A445A6080.0A0A445A608_ARAHY; Uncharacterized protein
STRINGGLYMA12G10710.20.0(Glycine max)
STRINGXP_007132557.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2