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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.LW9GQ | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | bHLH | ||||||||
Protein Properties | Length: 134aa MW: 14621.7 Da PI: 8.5092 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.6 | 9.4e-08 | 3 | 31 | 22 | 55 |
HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55 L+ l+P++ K +Ka++L +A+eY+k+Lq Araip.LW9GQ 3 ALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 31 699999997.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 2.1E-11 | 1 | 41 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.76E-8 | 1 | 35 | No hit | No description |
PROSITE profile | PS50888 | 11.928 | 1 | 30 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 8.11E-11 | 2 | 41 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-5 | 3 | 31 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MKALQNLIPN SNKTDKASML DEAIEYLKQL QLQVQMLMMR NGLSLHPMSL PGGLRPMILP 60 HTGVDFDEGN RFQNSINGGA PSSYTADESL VARPPFGFHR PCSISNQSAA MPSLTNLATS 120 DNSSSFQSSI KVIR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.LW9GQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT147727 | 5e-49 | BT147727.1 Lotus japonicus clone JCVI-FLLj-8F4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016207876.1 | 7e-90 | transcription factor APG isoform X1 | ||||
Refseq | XP_025606946.1 | 7e-90 | transcription factor APG-like isoform X1 | ||||
Refseq | XP_025660346.1 | 7e-90 | transcription factor APG-like isoform X1 | ||||
TrEMBL | A0A445CXW3 | 4e-87 | A0A445CXW3_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA14G09231.1 | 2e-54 | (Glycine max) | ||||
STRING | GLYMA17G35951.1 | 2e-54 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2276 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 8e-17 | bHLH family protein |