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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.LE5CL | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ERF | ||||||||
Protein Properties | Length: 262aa MW: 29514.2 Da PI: 8.7879 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.5 | 3.2e-18 | 42 | 92 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 ykGVr++ +g+WvAeIr+p+ r r++lg+f t eAa a++aa++kl+g+ Araip.LE5CL 42 TYKGVRQRI-WGKWVAEIREPR----RgSRIWLGTFNTSHEAALAYDAAARKLYGH 92 69****998.**********83....46*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.20E-21 | 41 | 101 | No hit | No description |
Pfam | PF00847 | 1.2E-13 | 42 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-21 | 42 | 100 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-35 | 42 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.049 | 42 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-29 | 42 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 43 | 54 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MIKAKMMGTD QEGKQLMRKQ AQTNSRKGCM RGKGGPQNAT CTYKGVRQRI WGKWVAEIRE 60 PRRGSRIWLG TFNTSHEAAL AYDAAARKLY GHDAKLNLPD LQPSISTTQD IQRDNLLQQQ 120 SHMMINQHNI GTSFNNNNNH LKPLVPMADE VGVTPIYTNE AIMSLPLRDD INNINNFNTK 180 PIILESFQNP TKPMDNNIIN NNNNVEKPSS SFSEPDFYDD SIWTEAAASL NFPMLSDANN 240 GFYEAGDMAW ICKFGFKSKH GS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-18 | 43 | 99 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.LE5CL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020961413.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_025662417.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A444YGE4 | 0.0 | A0A444YGE4_ARAHY; Uncharacterized protein | ||||
STRING | XP_007136043.1 | 3e-56 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 4e-38 | ERF family protein |