PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.L8K4F
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family AP2
Protein Properties Length: 552aa    MW: 61397.7 Da    PI: 8.2043
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.L8K4FgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.81e-11151194155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++grW+++I+d           +g f+ta  Aa+a+++a+ k++g
  Araip.L8K4F 151 SQYRGVTFYRRTGRWESHIWD-----------CGGFDTAHAAARAYDRAAIKFRG 194
                  78*******************...........899*****************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-11151203IPR016177DNA-binding domain
PfamPF008473.5E-4151194IPR001471AP2/ERF domain
SMARTSM003806.1E-24152208IPR001471AP2/ERF domain
PROSITE profilePS5103213.788152202IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-10152203IPR001471AP2/ERF domain
SMARTSM003801.6E-4238357IPR001471AP2/ERF domain
PRINTSPR003676.5E-6239250IPR001471AP2/ERF domain
PRINTSPR003676.5E-6333353IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MFDLNLNADC DDSTQNGDSA VVMLCEKLPE GSWNQMTESA GTSNSSVVNA DGSSNNDDSS  60
CSTRVTDNAL TFNFGILKAD DNGVVTKELF PVNGGANFVD SVNWQKSKFQ GTNGSIDLSF  120
NRQGVVDGEV KVVQVQQPAK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGGFDTAHA  180
AARAYDRAAI KFRGVEADIN FNLSDYEDDL KQTKNLSKEE FVHILRRQST GFSRGSSKYR  240
GVTLHKCGRW EARMGQFLGK KIRCWEFKYV VGCKESWFLL QPSTQWVFTL FTFLEKHVYI  300
SWAIRQRSRS CKVLVIPLQS NPCIPFDFLE FRAYDKAAIK CNGREAVTNF EPSTYEGEMK  360
SPAINEGGSP NLELNLGIST PGHGLKENRG QLQFPWVPYS MHAGRTMVET NVNSVIGNPS  420
SERLVATEEH PSLWNGVNPS FFPNQVQTLQ HSASIEIELS SERADRISID HSKGLPGWPW  480
QMHNQITATP VPPFSVAASS GFSISATFPS NAIFPAKSMN STPQSLCFPS SAAPISTATQ  540
YYYQAKPRQA PP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.L8K4F
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310866e-95KT031086.1 Glycine max clone HN_CCL_205 AP2-EREBP transcription factor (Glyma12g07800.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016187362.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
RefseqXP_025641860.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK033e-77RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A445A9S30.0A0A445A9S3_ARAHY; Uncharacterized protein
STRINGGLYMA12G07800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.35e-72related to AP2.7