PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.L83F8
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 407aa    MW: 44861.4 Da    PI: 6.4375
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.L83F8genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.61.5e-053003381154
                  HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Araip.L83F8 300 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEATEYIKFL 338
                  5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.15289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-11299355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.69E-6299342No hitNo description
Gene3DG3DSA:4.10.280.104.6E-9303346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MADDQFRASA NWWDSSRNVV RFESRESQSG PWHGVGDDEM KLPIRSSTME NSMSSSSSAG  60
ASSGRSSVVF HERLQQQQNL DSPNLSNDPN LHMMMGLGLS SHSSMDWNQA SFMRAEKTSE  120
MLQQETGMGL SNRGFSLDQT QFSPQYSSCS GDSNITSQQL LSSNFQMDSS SSAPLYCNTS  180
MLQGLLGPES NNQAHQGPIS NFPYSTCLNS NNNNNQLHFT NNAPFWNASE PAPVSIKDAR  240
SIFFPSLHQP FSAPSFDQQS KNISEVRDSG GSMLKKSENE QSSKRPRNET PPSPLPAFKV  300
RKEKMGDRIT ALQQLVSPFG KTDTASVLSE ATEYIKFLHE QVTVLSTPYM KSGAQTQHHQ  360
NSGKSKEADG PKQDLRSRGL CLVPISSTFP VTHEPTVDFW TPTFGGT
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.L83F8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150399e-38AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016188654.10.0transcription factor bHLH123 isoform X3
RefseqXP_025643768.10.0transcription factor bHLH123 isoform X5
SwissprotQ8GXT31e-70BH123_ARATH; Transcription factor bHLH123
TrEMBLA0A445A4250.0A0A445A425_ARAHY; Uncharacterized protein
STRINGGLYMA12G17630.11e-150(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111833106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.14e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]