 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Araip.L4V14 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
| Family |
HB-other |
| Protein Properties |
Length: 347aa MW: 38471.5 Da PI: 8.5947 |
| Description |
HB-other family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Araip.L4V14 | genome | NCGR_PGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 21.7 | 3.4e-07 | 13 | 74 | 6 | 55 |
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
+ft++++ e+e+ ++ n p ++ + +A+k ++ rqV +WFqN+R+
Araip.L4V14 13 RFTSSEVAEMEAILHEhnNAMPARDVLTAIAEKFsespgrkdkiTVQMRQVWNWFQNKRYAI 74
69999999***9999656999*********************99999************865 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MGRPPSNGGP AFRFTSSEVA EMEAILHEHN NAMPARDVLT AIAEKFSESP GRKDKITVQM 60
RQVWNWFQNK RYAIRAKLNK SLVKLDITPM TKASSAVVKN IHQPTAATIP TASGKVTQES 120
SATEFEAKSG RDRAWYDVAN FIMHRYLESG DPEVLVRFSG FGPAEDEWVN VRKNVRPRSL 180
PCESAECVAV LPGDLILCFQ EGKEQALYFD AHVLDAQRRR HDVRGCRCRF LVRYDHDQSE 240
EIVQLRKICR RPETDFRLQQ LHAVPEMKSG MDPAPVHAVR VTTSAESQKQ QNANTPMSTL 300
AQSISKVETS SDVTAGSVFP VSAATFATNV ASSSVHGASS HSMAEGK
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4iuq_A | 2e-46 | 120 | 253 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuq_B | 2e-46 | 120 | 253 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iur_A | 2e-46 | 120 | 253 | 1 | 134 | SHH1 SAWADEE |
| 4iur_B | 2e-46 | 120 | 253 | 1 | 134 | SHH1 SAWADEE |
| 4iut_A | 2e-46 | 120 | 253 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iut_B | 2e-46 | 120 | 253 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_A | 2e-46 | 120 | 253 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuu_B | 2e-46 | 120 | 253 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_A | 2e-46 | 120 | 253 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| 4iuv_B | 2e-46 | 120 | 253 | 1 | 134 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G18380.1 | 1e-116 | sequence-specific DNA binding transcription factors;sequence-specific DNA binding |
