PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.L4GEP
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 552aa    MW: 60765.8 Da    PI: 7.5564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.L4GEPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.87.1e-17336382455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++ +L++l+P++      K +Ka++Le+A+eY+ksLq
  Araip.L4GEP 336 VHNLSERRRRDRINEKMRTLQQLIPNS-----NKTDKASMLEEAIEYLKSLQ 382
                  6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-20329395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.463332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.11E-18335386No hitNo description
PfamPF000102.6E-14336382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-19336390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-17338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MMNNNSTIPG WNFESDACVI NQKSPIGLDQ DLVELLWKNG QVVLSSQTQR KPVQKSDASS  60
TLRNGVHCGN SSSNLSQQED ETASWIQYQV EDHPMGQELC SSNLLSQLTP CEVEAYKPIK  120
QLEEPKFAKF ATPNANLSPQ QQNNNIKPIN PMPAPRFQVA PDSSNQKTND FVGGSSSSQK  180
VPKFSHHFSA PAQQKFREKV NGNNNVLQSE GRECSVMTVG SSHCGSNNII PQEQDTTFSE  240
AVKDCVQRSV PNWSNNKGKS SEMIEATVTS SSGGSGSSLG KTTCSLSTGN HLSLKRKITD  300
ADESEEQSEA TEPKSGVGNK TSQRSGSSRR NRAAEVHNLS ERRRRDRINE KMRTLQQLIP  360
NSNKTDKASM LEEAIEYLKS LQLQLQVMWM GAGMTPVMFP GIQHYMSQMS AMGMAAASQP  420
SLSSMQNPMQ IPRMPLDQSN MPSTVSVPHH QTPSNQALMC QNPVLGAFNY QNHQMQNPCL  480
ADQYARYMAY HHLMQTASQP INVFGHGSQA VQQSQTMMPP SNNNGTMNVA PNFEDAITAK  540
MGTSTFQQLN NN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340345ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.L4GEP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016166783.10.0transcription factor PIF4
RefseqXP_016166784.10.0transcription factor PIF4
RefseqXP_016166785.10.0transcription factor PIF4
RefseqXP_016166786.10.0transcription factor PIF4
RefseqXP_025668199.10.0transcription factor PIF4
RefseqXP_025668200.10.0transcription factor PIF4
RefseqXP_025668201.10.0transcription factor PIF4
RefseqXP_025668202.10.0transcription factor PIF4
RefseqXP_025668203.10.0transcription factor PIF4
TrEMBLA0A444YEN10.0A0A444YEN1_ARAHY; Uncharacterized protein
STRINGGLYMA02G45150.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81462944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.21e-59phytochrome interacting factor 4