PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Araip.L3N7F

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C2H2

Protein Properties

Length: 270aa MW: 30994.5 Da PI: 8.7238

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.L3N7F	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00027	104	127	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 +kC++C+ksF++ L +H + H Araip.L3N7F 104 WKCGYCKKSFRDEKFLDQHFDNrH 127 58**************99976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.058	104	132	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	106	127	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MNKAIDFASV FLLFTLFSHQ FILRVSSSNS PILPNQGYAD ERILKPEQEH VHEVHCSRER 60 SRAARKVIEE QENYQLSSKC RLHPENDMFR DQEEHKICLG FHDWKCGYCK KSFRDEKFLD 120 QHFDNRHSNH LNLSDGKCLA DLCGALHCDA VMNTKFSRSK CNPAAATRNK HLCESLAESC 180 FPVSDGPSAS RLHEIFLHQF CEAHTCSGKQ KPFSRGGKVQ KSIFVVVSGA LILVLLPLFY 240 LFLYLVQRDM KSSTQELRRI SKMGRKSKPS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.L3N7F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016187605.1	0.0	uncharacterized protein LOC107629345
Refseq	XP_020973371.1	0.0	uncharacterized protein LOC107629345
Refseq	XP_025641544.1	0.0	uncharacterized protein LOC112736352
TrEMBL	A0A445AAG2	0.0	A0A445AAG2_ARAHY; Uncharacterized protein
STRING	XP_004515836.1	1e-136	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3216	13	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	2e-92	C2H2-like zinc finger protein