PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.KNC8H
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 268aa    MW: 30249.7 Da    PI: 7.8269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.KNC8HgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.000321682061255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Araip.KNC8H 168 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 206
                  6677888999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.664156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-10165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-8166222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.17E-6168210No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MKLNLHLFFF VFFLKQHEHL IIIKGPFYIS FDFCSTGLPG EEERLGFNHF HQSKKLENWD  60
DHNILLNNNN NQHNTRVGPN NNNNNNNMIV DGIIKQEVSQ SGNLYGQEEF HASNGSTWST  120
HMVPINSSSP RSSVTTNNNN NNNLLDFSYN KVDHSKNNQL PYATPQVRKE KLGDRITALH  180
QLVSPFGKTD TASVLLEAIG YIRFLQSQIE LLNDTGLKRK AASSQDSKDN KAKDLRSRGL  240
CLVPVSFTQH VGNENGADFW APAYGSGF
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.KNC8H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0527336e-44BT052733.1 Medicago truncatula clone MTYFH_FI_FJ_FK1G-C-2 unknown mRNA.
GenBankBT1495456e-44BT149545.1 Medicago truncatula clone JCVI-FLMt-16P10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016175203.11e-134transcription factor bHLH68
RefseqXP_025679478.11e-134transcription factor bHLH68 isoform X1
RefseqXP_025679479.11e-134transcription factor bHLH68 isoform X1
TrEMBLA0A444XD611e-138A0A444XD61_ARAHY; Uncharacterized protein
STRINGXP_004486757.19e-80(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.13e-39bHLH family protein