PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.KD5HD | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | TALE | ||||||||
Protein Properties | Length: 187aa MW: 21260.5 Da PI: 7.8817 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 25.6 | 2.2e-08 | 106 | 139 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Araip.KD5HD 106 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 139 469*****************************87 PP | |||||||
2 | ELK | 30.7 | 6.8e-11 | 60 | 81 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+ +++++++E++ Araip.KD5HD 60 ELKHELKQGYKDKIVDIREEIL 81 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01188 | 5.1E-4 | 60 | 81 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 60 | 80 | IPR005539 | ELK domain |
Pfam | PF03789 | 4.9E-6 | 60 | 81 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 80 | 143 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-11 | 82 | 147 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-16 | 82 | 145 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.32E-12 | 83 | 144 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 87 | 144 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.5E-18 | 100 | 139 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MTGVSPGEGT GATMSDDEDD QVDSDANLFD GGLDGSDSMG FGPLVPTENE RSLMERVRHE 60 LKHELKQGYK DKIVDIREEI LRKRRAGKLP GDTTSVLKAW WQSHSKWPYP TEEDKARLVQ 120 ETGLQLKQIN NWFINQRKRN WHSNPSTSTS LKSKRKRYSN NHNIYMILLS SLNNNNKTNN 180 AGDNSAE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 2e-13 | 83 | 147 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 156 | RKRNWHSNPSTSTSLKSKRKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.KD5HD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF128060 | 1e-148 | EF128060.1 Medicago truncatula class II KNOX homeobox transcription factor (KNOX5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015945370.1 | 1e-112 | homeobox protein knotted-1-like 3 | ||||
Refseq | XP_025623574.1 | 1e-112 | homeobox protein knotted-1-like 3 isoform X2 | ||||
Swissprot | P48000 | 1e-98 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A445B4Y4 | 1e-110 | A0A445B4Y4_ARAHY; Uncharacterized protein | ||||
STRING | XP_007136985.1 | 1e-108 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11060.1 | 6e-87 | KNOTTED1-like homeobox gene 4 |
Publications ? help Back to Top | |||
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