PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.K64LC

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 437aa MW: 50106.8 Da PI: 9.5024

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.K64LC	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.8	3e-17	11	97	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+egk +++ + +++t+++ +C a+ ++ k g w ++k++l+H+H+++p Araip.K64LC 11 KFYRNYAKAAGFSIRVRSTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARNYIHTLKdVGAWIISKVVLDHSHPCCP 97 6**************98887..8889*********998877...8999**********988879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-14	11	97	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.062	224	260	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.7E-5	225	257	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	235	262	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence Send to blast
MTFTTLEDAE KFYRNYAKAA GFSIRVRSTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN 60 PTAGLNCPAR NYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRIIENN 120 EEADLYEDHH IWVPIYLDHH FWAGMRSTQR SESMHSFFNK LITRNSSLIQ FVKQYDNCLG 180 SREQAERESD AADFHTVIPC ATKSSIEAQF QDVYTHQNSI FNKFVVTYDS VVAEVKCQCL 240 LFESRGILCR HALSVLSFEQ VSQVSPRYIL ERWSKKVKRR HTHIKSSHDE PLLEPRSKRF 300 DQLVSRSQNI CEFASESEEL TVILHRAYDN VMVDMESLKA KRKGTSSLSH EDANLESVNE 360 LQSPPRIRTR GRPKNRLGSK LDKQIANATK KKKTKGLNEL NLFDAASVVH SNSSQYQGHV 420 MNYQFRVPGA GDNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence Send to blast

MTFTTLEDAE KFYRNYAKAA GFSIRVRSTN RKGNEIKNQL ITCSREGKWK SKISPTEKTN  60
PTAGLNCPAR NYIHTLKDVG AWIISKVVLD HSHPCCPSKA EMLKQHRELS MSIRRIIENN  120
EEADLYEDHH IWVPIYLDHH FWAGMRSTQR SESMHSFFNK LITRNSSLIQ FVKQYDNCLG  180
SREQAERESD AADFHTVIPC ATKSSIEAQF QDVYTHQNSI FNKFVVTYDS VVAEVKCQCL  240
LFESRGILCR HALSVLSFEQ VSQVSPRYIL ERWSKKVKRR HTHIKSSHDE PLLEPRSKRF  300
DQLVSRSQNI CEFASESEEL TVILHRAYDN VMVDMESLKA KRKGTSSLSH EDANLESVNE  360
LQSPPRIRTR GRPKNRLGSK LDKQIANATK KKKTKGLNEL NLFDAASVVH SNSSQYQGHV  420
MNYQFRVPGA GDNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.K64LC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-28	far-red elongated hypocotyls 3