PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.K54KT

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 713aa MW: 81742.3 Da PI: 8.5739

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.K54KT	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	44.6	4.8e-14	69	138	1	70
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkk 70 +fY +Y+k+ GFs rksk+ k+ g+i+k++fvC ++g+ree+ + +++++++r etrtgC+a++ + Araip.K54KT 69 DFYLKYSKSKGFSARKSKTFKN-SIGKIYKQKFVCHRQGFREEKYYTmEKRKKEPRLETRTGCEARMDHFQ 138 6***************9999.6677************999856777789**********7555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.9E-12	69	145	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.99	219	257	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 713 aa Download sequence Send to blast
MDEQNEFEQD FGDSFTEGAY FSESDQSEDI LEVAYAVDSV QDITTLKFSE NFAEKIGKYH 60 FSTLQLAFDF YLKYSKSKGF SARKSKTFKN SIGKIYKQKF VCHRQGFREE KYYTMEKRKK 120 EPRLETRTGC EARMDHFQRC VAHLHFKEFN TDYESTRGVP VMQTCIEMLE RYANELYTHE 180 IFLFFRPFLS RAGSMRVLNI ENNDDCIKYI MCKHGRPDFM WTVDFHQEEM IFMCTCLRMK 240 SFGIPCEHIV KVLVDRDICE IPRSLVLDRW TKEVKSALND PSGFTRDAVV ISRQSALMEF 300 SKQLAAVAAK VPERYEETRD LIMGLYSSYK AADEGTNQPQ SGVAKSSNLY VHQSGVGSGQ 360 PSRKKWQHCS VCQMEGHKKT TCSWQKDIDN NVIEDEANGS DDADVYPEPT AKIRKANLQS 420 LYIRVLPVTS VIVGASVASS FFLTKNRFLV LPQSEPNQTG QIENPKKLLE SLVGKLDRTG 480 RSNRNRCFKN QHKLLNRPKI GRSNRTETRP GKCPSLHQRN QTLASTNLVA VYRSERLLLP 540 PPSDSRTSIF VLSAFVTSLS PSPIRSHESP VRSPSPFRSH QSPVCCRPLC STALRRPSKV 600 SGNGSSDIFV KLNMQPSATI TLGWLVLDSM NFLFYFDLGP FLLFLLLLEF SESDRVLNHL 660 IYIHRIEVII HEPRSVHIQN INILLLQSIP TPGQWVALLS GKWYKNEDFD DSK

Sequence ? help Back to Top

Protein Sequence Length: 713 aa Download sequence Send to blast

MDEQNEFEQD FGDSFTEGAY FSESDQSEDI LEVAYAVDSV QDITTLKFSE NFAEKIGKYH  60
FSTLQLAFDF YLKYSKSKGF SARKSKTFKN SIGKIYKQKF VCHRQGFREE KYYTMEKRKK  120
EPRLETRTGC EARMDHFQRC VAHLHFKEFN TDYESTRGVP VMQTCIEMLE RYANELYTHE  180
IFLFFRPFLS RAGSMRVLNI ENNDDCIKYI MCKHGRPDFM WTVDFHQEEM IFMCTCLRMK  240
SFGIPCEHIV KVLVDRDICE IPRSLVLDRW TKEVKSALND PSGFTRDAVV ISRQSALMEF  300
SKQLAAVAAK VPERYEETRD LIMGLYSSYK AADEGTNQPQ SGVAKSSNLY VHQSGVGSGQ  360
PSRKKWQHCS VCQMEGHKKT TCSWQKDIDN NVIEDEANGS DDADVYPEPT AKIRKANLQS  420
LYIRVLPVTS VIVGASVASS FFLTKNRFLV LPQSEPNQTG QIENPKKLLE SLVGKLDRTG  480
RSNRNRCFKN QHKLLNRPKI GRSNRTETRP GKCPSLHQRN QTLASTNLVA VYRSERLLLP  540
PPSDSRTSIF VLSAFVTSLS PSPIRSHESP VRSPSPFRSH QSPVCCRPLC STALRRPSKV  600
SGNGSSDIFV KLNMQPSATI TLGWLVLDSM NFLFYFDLGP FLLFLLLLEF SESDRVLNHL  660
IYIHRIEVII HEPRSVHIQN INILLLQSIP TPGQWVALLS GKWYKNEDFD DSK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.K54KT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A445A482	0.0	A0A445A482_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10649	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-13	FAR1-related sequence 5