PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.K03PB

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 519aa MW: 59629.8 Da PI: 9.2065

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.K03PB	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	55.8	1.5e-17	56	142	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r++ ++++ ++ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k + w ++k+ l+H+H+++p Araip.K03PB 56 KFYRNYAKAAGFSTRVRCTNRK--ENEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVDAWIISKVMLDHSHPCCP 142 6*************988776..7779*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-15	56	142	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.186	301	337	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-4	303	334	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.0E-4	312	339	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MDHSTSAESR RTDARVYYIR HDWFLTWCNV QPLSVVDDEL VPKVGMTFTT LEDAGKFYRN 60 YAKAAGFSTR VRCTNRKENE IKNQLITCSR EGKWKSKISP TEKTNPTAGL NCPARIYIHT 120 LKDVDAWIIS KVMLDHSHPC CPSKAEMLKQ HRELSMSICR TIENNEEADR HIWVPIYLDH 180 HFWTGMRSTQ RSEIMHSFFN KYITRNSSLI QFVKQYDNCL GSREQAERES DAADFHTVIP 240 CATKSSIEAQ FQDAYTHQKF RKVQAQFRGK ANCITRLTNS ALGYSVYEVG EQVFSSIFNK 300 FVVTYDSVAA EVKCQCLLFE SRGILCRHAL SVLSFEQVSQ VSPRYILERW SKKVKRRHTH 360 IKSSHDEPLM EPRSKRFDQL VFRSQNICEF ASESEELTVI LHCAYDNVMA EMESLKAKRK 420 GTSSLSHEDA NLESVNELQS PPRIRTRGRP KNRLGSKLDK QIANATKKKK TKVLSEINLF 480 DAASAVHSNS SQYQGHVMNY QFRVPAAGEY GCRSTVLLG

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MDHSTSAESR RTDARVYYIR HDWFLTWCNV QPLSVVDDEL VPKVGMTFTT LEDAGKFYRN  60
YAKAAGFSTR VRCTNRKENE IKNQLITCSR EGKWKSKISP TEKTNPTAGL NCPARIYIHT  120
LKDVDAWIIS KVMLDHSHPC CPSKAEMLKQ HRELSMSICR TIENNEEADR HIWVPIYLDH  180
HFWTGMRSTQ RSEIMHSFFN KYITRNSSLI QFVKQYDNCL GSREQAERES DAADFHTVIP  240
CATKSSIEAQ FQDAYTHQKF RKVQAQFRGK ANCITRLTNS ALGYSVYEVG EQVFSSIFNK  300
FVVTYDSVAA EVKCQCLLFE SRGILCRHAL SVLSFEQVSQ VSPRYILERW SKKVKRRHTH  360
IKSSHDEPLM EPRSKRFDQL VFRSQNICEF ASESEELTVI LHCAYDNVMA EMESLKAKRK  420
GTSSLSHEDA NLESVNELQS PPRIRTRGRP KNRLGSKLDK QIANATKKKK TKVLSEINLF  480
DAASAVHSNS SQYQGHVMNY QFRVPAAGEY GCRSTVLLG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.K03PB

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A444X817	0.0	A0A444X817_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	6e-32	far-red elongated hypocotyls 3